#bin swScore milliDiv milliDel milliIns genoName genoStart genoEnd genoLeft strand repName repClass repFamily repStart repEnd repLeft id 729 266 317 0 24 chr21 19000426 19000510 -29129385 - L2a LINE L2 -5 3421 3340 2 729 2938 166 9 27 chr21 19000517 19000821 -29129074 - MLT2B4 LTR ERVL 0 552 264 2 729 2532 67 0 7 chr21 19000821 19001120 -29128775 - AluSx SINE Alu -15 297 1 2 729 2938 165 9 25 chr21 19001120 19001384 -29128511 - MLT2B4 LTR ERVL -293 263 1 2 729 234 277 0 0 chr21 19001384 19001431 -29128464 - L2a LINE L2 -77 3310 3264 2 729 1990 116 0 34 chr21 19001441 19001733 -29128162 + AluSz6 SINE Alu 27 308 -4 2 729 960 195 6 17 chr21 19001733 19001928 -29127967 + AluJb SINE Alu 134 312 0 2 729 809 182 8 0 chr21 19002009 19002169 -29127726 + FLAM_A SINE Alu 1 142 0 2 729 406 263 79 92 chr21 19002549 19003018 -29126877 - L1MC5 LINE L1 -48 7913 7451 2 729 1549 160 4 4 chr21 19004192 19004429 -29125466 - AluJb SINE Alu -75 237 1 2 729 2479 66 7 7 chr21 19004903 19005204 -29124691 + AluY SINE Alu 1 301 -10 2 91 3134 162 114 33 chr21 19005328 19005601 -29124294 + LTR48 LTR ERV1 1 314 -473 2 730 1880 139 45 7 chr21 19005601 19005888 -29124007 + AluJo SINE Alu 2 299 -13 2 730 3134 162 114 33 chr21 19005888 19006342 -29123553 + LTR48 LTR ERV1 315 787 0 2 730 951 188 0 24 chr21 19007057 19007227 -29122668 - FAM SINE Alu -9 176 11 2 730 299 353 24 29 chr21 19007442 19007584 -29122311 - MIR3 SINE MIR -89 179 30 2 730 24 0 0 0 chr21 19007883 19007907 -29121988 + AT_rich Low_complexity Low_complexity 1 24 0 2 730 2159 239 21 13 chr21 19008041 19008665 -29121230 - L1M5 LINE L1 -1429 4717 4089 2 730 25 0 0 0 chr21 19008674 19008699 -29121196 + AT_rich Low_complexity Low_complexity 1 25 0 2 730 588 238 244 17 chr21 19009041 19009409 -29120486 - MLT1G1 LTR ERVL-MaLR 0 579 97 2 730 2048 97 32 55 chr21 19009435 19009744 -29120151 - AluSx1 SINE Alu -10 302 1 2 730 455 118 0 13 chr21 19009865 19009942 -29119953 + (TTCC)n Simple_repeat Simple_repeat 1 76 0 2 730 1873 138 6 55 chr21 19010035 19010361 -29119534 + AluSx SINE Alu 2 311 -1 2 730 256 368 41 15 chr21 19010400 19010596 -29119299 + L2b LINE L2 2921 3121 -254 2 730 211 345 43 34 chr21 19010611 19010728 -29119167 + L2b LINE L2 3242 3359 -67 2 730 726 215 8 0 chr21 19011323 19011453 -29118442 + AluJr SINE Alu 2 132 -180 2 730 316 270 80 9 chr21 19011461 19011573 -29118322 + MIRc SINE MIR 135 254 -14 2 730 2625 120 46 5 chr21 19011742 19012153 -29117742 - MSTA LTR ERVL-MaLR 0 428 1 2 730 9392 173 15 4 chr21 19012156 19013784 -29116111 - MSTA-int LTR ERVL-MaLR -4 1647 1 2 730 2395 144 44 7 chr21 19013784 19014197 -29115698 - MSTA LTR ERVL-MaLR 0 428 1 2 730 1465 226 40 0 chr21 19014627 19014802 -29115093 - AluJb SINE Alu -3 309 133 2 730 300 27 0 0 chr21 19014802 19014839 -29115056 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 2 730 1465 226 40 0 chr21 19014839 19014960 -29114935 - AluJb SINE Alu -180 132 2 2 730 528 201 48 67 chr21 19015046 19015211 -29114684 - MER5A1 DNA hAT-Charlie -3 163 2 2 730 207 139 0 0 chr21 19015329 19015365 -29114530 + (GA)n Simple_repeat Simple_repeat 2 37 0 2 730 293 265 110 24 chr21 19016168 19016280 -29113615 + MIR3 SINE MIR 1 114 -154 2 730 323 287 56 25 chr21 19016313 19016474 -29113421 + MER5B DNA hAT-Charlie 12 177 -1 2 730 2022 162 20 0 chr21 19016583 19016929 -29112966 - MLT1A0 LTR ERVL-MaLR -3 362 10 2 730 2073 156 38 71 chr21 19017110 19017532 -29112363 + MSTB LTR ERVL-MaLR 19 426 0 2 730 387 362 111 47 chr21 19017711 19018180 -29111715 + L2 LINE L2 216 714 -2705 2 730 883 280 119 35 chr21 19018401 19018974 -29110921 - L1MC4a LINE L1 -1957 5925 5305 2 730 24 0 0 0 chr21 19019169 19019193 -29110702 + AT_rich Low_complexity Low_complexity 1 24 0 2 730 24 0 0 0 chr21 19019203 19019227 -29110668 + AT_rich Low_complexity Low_complexity 1 24 0 2 730 874 205 74 4 chr21 19019612 19019842 -29110053 - ORSL DNA hAT-Tip100 -29 246 1 2 730 1208 154 200 17 chr21 19019877 19020117 -29109778 - AluJb SINE Alu -28 284 1 2 730 279 246 74 14 chr21 19020423 19020536 -29109359 - MLT1H2 LTR ERVL-MaLR 0 579 372 2 730 316 362 36 0 chr21 19020557 19020695 -29109200 + L2 LINE L2 1965 2107 -1312 2 730 1641 258 22 28 chr21 19020791 19021290 -29108605 - MLT1D LTR ERVL-MaLR 0 505 10 2 730 247 370 116 0 chr21 19021440 19021586 -29108309 - L2 LINE L2 -2812 607 445 2 730 930 154 64 0 chr21 19021600 19021756 -29108139 + FAM SINE Alu 12 177 -8 2 730 307 273 10 0 chr21 19022970 19023069 -29106826 + (TA)n Simple_repeat Simple_repeat 2 101 0 2 730 1291 155 45 11 chr21 19023071 19023357 -29106538 - L1MA7 LINE L1 -5 6286 5991 2 730 246 316 126 96 chr21 19023428 19023929 -29105966 + MamGypLTR1b LTR Gypsy 47 562 -220 2 730 349 328 43 14 chr21 19024122 19024265 -29105630 + MIRb SINE MIR 110 260 -8 2 730 22 0 0 0 chr21 19024358 19024380 -29105515 + AT_rich Low_complexity Low_complexity 1 22 0 2 730 4618 62 23 0 chr21 19025010 19025611 -29104284 + L1PA7 LINE L1 5534 6148 -6 2 730 2470 80 6 10 chr21 19025884 19026198 -29103697 - AluSp SINE Alu 0 313 1 2 730 435 243 76 45 chr21 19026233 19026457 -29103438 - HAL1 LINE L1 -1 2506 2276 2 730 183 200 0 113 chr21 19026502 19026564 -29103331 + L4 LINE RTE 97 151 -1878 2 730 389 291 57 50 chr21 19026576 19026855 -29103040 - HAL1 LINE L1 -271 2236 1956 2 730 2215 259 74 59 chr21 19026899 19027943 -29101952 - HAL1 LINE L1 -629 1878 820 2 730 3812 163 27 7 chr21 19028023 19028720 -29101175 - MER50 LTR ERV1 -23 711 1 2 730 924 192 5 29 chr21 19028720 19028922 -29100973 + MER3 DNA hAT-Charlie 13 209 0 2 730 366 326 222 25 chr21 19028930 19029169 -29100726 - HAL1 LINE L1 -1804 703 418 2 730 303 314 102 93 chr21 19029188 19029355 -29100540 - HAL1 LINE L1 -2171 336 155 2 730 2373 85 14 0 chr21 19029355 19029648 -29100247 - AluSc SINE Alu -12 297 1 2 730 303 314 102 93 chr21 19029648 19029662 -29100233 - HAL1 LINE L1 -2353 154 154 2 730 1715 147 15 33 chr21 19029662 19029934 -29099961 - AluJo SINE Alu -45 267 1 2 730 303 314 102 93 chr21 19029934 19030074 -29099821 - HAL1 LINE L1 -2353 154 11 2 730 968 282 64 8 chr21 19030085 19030475 -29099420 - Kanga2_a DNA TcMar-Tc2 -474 414 3 2 730 1546 202 130 55 chr21 19031525 19032192 -29097703 - LTR48 LTR ERV1 -7 637 1 2 730 514 307 94 22 chr21 19032224 19032447 -29097448 - MIRb SINE MIR -9 259 21 2 730 2237 95 0 0 chr21 19033724 19034025 -29095870 + AluSc SINE Alu 6 309 0 2 730 2072 141 3 3 chr21 19034047 19034353 -29095542 + AluSq2 SINE Alu 1 306 -6 2 730 2833 23 0 0 chr21 19034829 19035132 -29094763 + AluY SINE Alu 1 303 -8 2 730 310 231 62 80 chr21 19035170 19035283 -29094612 - L2c LINE L2 0 3387 3277 2 730 540 202 9 0 chr21 19035416 19035525 -29094370 - MER63D DNA hAT-Blackjack -948 113 4 2 730 307 222 88 80 chr21 19035598 19035735 -29094160 + MamGypLTR1b LTR Gypsy 4 141 -641 2 730 292 307 71 46 chr21 19035802 19036041 -29093854 + MamGypLTR1b LTR Gypsy 536 780 -2 2 730 249 356 149 0 chr21 19036052 19036240 -29093655 - L2 LINE L2 -574 2845 2630 2 730 395 306 20 0 chr21 19036309 19036407 -29093488 + L2b LINE L2 3275 3374 -1 2 730 3114 154 13 29 chr21 19036466 19037131 -29092764 + L1MC1 LINE L1 5176 5828 -505 2 730 1353 179 49 0 chr21 19037131 19037355 -29092540 + AluJb SINE Alu 1 235 -77 2 730 2060 171 48 34 chr21 19037355 19037651 -29092244 + L1MC1 LINE L1 5841 6150 -183 2 730 1589 183 225 17 chr21 19037651 19038073 -29091822 + LTR54 LTR ERV1 1 510 0 2 730 2060 171 48 34 chr21 19038073 19038154 -29091741 + L1MC1 LINE L1 6151 6231 -102 2 730 192 40 0 0 chr21 19038154 19038179 -29091716 + (TG)n Simple_repeat Simple_repeat 2 26 0 2 730 2060 171 48 34 chr21 19038179 19038278 -29091617 + L1MC1 LINE L1 6232 6324 -9 2 730 2387 100 0 0 chr21 19038278 19038577 -29091318 + AluSc8 SINE Alu 1 299 -13 2 730 1379 224 40 0 chr21 19039042 19039363 -29090532 - LTR51 LTR ERV1 -97 574 241 2 730 1981 113 50 30 chr21 19039494 19039831 -29090064 - MER61C LTR ERV1 0 428 85 2 730 225 293 122 0 chr21 19039879 19039961 -29089934 - MER101B LTR ERV1 -469 101 10 2 730 596 279 172 42 chr21 19039986 19040434 -29089461 - LTR82B LTR ERVL -154 676 178 2 730 2186 96 48 0 chr21 19040434 19040726 -29089169 - AluSq2 SINE Alu -6 306 1 2 730 596 279 172 42 chr21 19040726 19040865 -29089030 - LTR82B LTR ERVL -653 177 13 2 730 207 274 10 87 chr21 19041416 19041439 -29088456 + MIR SINE MIR 141 161 -101 2 730 878 103 16 40 chr21 19041439 19041565 -29088330 + AluJr SINE Alu 2 124 -188 2 730 207 274 10 87 chr21 19041571 19041651 -29088244 + MIR SINE MIR 162 236 -26 2 730 250 259 14 6 chr21 19041667 19041756 -29088139 - MIR SINE MIR -51 217 126 2 730 2185 111 17 0 chr21 19041884 19042172 -29087723 - AluSx3 SINE Alu -19 293 1 2 730 485 283 65 7 chr21 19042176 19042315 -29087580 - MIR SINE MIR -114 148 2 2 730 229 308 0 0 chr21 19042526 19042604 -29087291 - MER117 DNA hAT-Charlie -117 80 3 2 730 198 0 0 0 chr21 19042651 19042673 -29087222 + (TC)n Simple_repeat Simple_repeat 1 22 0 2 730 1786 186 20 28 chr21 19042742 19042974 -29086921 + MLT1B LTR ERVL-MaLR 1 227 -163 2 730 2588 145 213 37 chr21 19042974 19043418 -29086477 + MER39 LTR ERV1 1 553 -154 2 730 2360 125 0 0 chr21 19043418 19043730 -29086165 - AluSx1 SINE Alu 0 312 1 2 730 2588 145 213 37 chr21 19043730 19043886 -29086009 + MER39 LTR ERV1 554 707 0 2 730 1786 186 20 28 chr21 19043886 19044046 -29085849 + MLT1B LTR ERVL-MaLR 228 390 0 2 730 228 330 24 115 chr21 19044312 19044521 -29085374 + L2c LINE L2 3178 3367 -20 2 730 1898 148 34 7 chr21 19044654 19044945 -29084950 + AluJr SINE Alu 1 299 -13 2 730 249 139 0 0 chr21 19046023 19046066 -29083829 + (A)n Simple_repeat Simple_repeat 1 43 0 2 730 404 70 42 14 chr21 19047255 19047327 -29082568 + MADE1 DNA TcMar-Mariner 2 75 -5 2 730 4822 75 25 15 chr21 19047523 19047945 -29081950 + PABL_A LTR ERV1 1 437 -223 2 730 2344 105 3 13 chr21 19047945 19048260 -29081635 + AluSx1 SINE Alu 1 312 0 2 730 4822 75 25 15 chr21 19048260 19048491 -29081404 + PABL_A LTR ERV1 438 660 0 2 730 338 312 11 154 chr21 19048744 19048867 -29081028 - MIR SINE MIR -10 252 129 2 730 7983 51 1 2 chr21 19048867 19049834 -29080061 - LTR13A LTR ERVK 0 966 1 2 730 338 312 11 154 chr21 19049834 19049903 -29079992 - MIR SINE MIR -134 128 78 2 730 2369 83 0 30 chr21 19049903 19050204 -29079691 + AluY SINE Alu 1 292 -19 2 730 338 312 11 154 chr21 19050204 19050283 -29079612 - MIR SINE MIR -185 77 20 2 730 3297 111 91 2 chr21 19050420 19050906 -29078989 + MER1A DNA hAT-Charlie 1 529 0 2 730 2378 82 3 0 chr21 19052079 19052372 -29077523 + AluSg SINE Alu 5 298 -12 2 730 825 240 21 77 chr21 19052617 19052654 -29077241 - MER58A DNA hAT-Charlie 0 224 187 2 730 2549 60 0 3 chr21 19052654 19052953 -29076942 + AluY SINE Alu 1 298 -13 2 730 825 240 21 77 chr21 19052953 19053150 -29076745 - MER58A DNA hAT-Charlie -38 186 3 2 730 3160 110 45 19 chr21 19053849 19054449 -29075446 - MER4B LTR ERV1 0 900 2 2 730 249 284 81 58 chr21 19054465 19054564 -29075331 + MER5B DNA hAT-Charlie 61 161 -28 2 730 2285 123 57 248 chr21 19054652 19055387 -29074508 - LTR49 LTR ERV1 0 595 1 2 730 201 395 0 0 chr21 19055392 19055473 -29074422 + MIRb SINE MIR 55 135 -133 2 730 26 64 0 0 chr21 19055733 19055780 -29074115 + AT_rich Low_complexity Low_complexity 1 47 0 2 730 5734 106 11 1 chr21 19055783 19056138 -29073757 - L1PB1 LINE L1 -3 6864 6510 2 730 441 0 0 0 chr21 19056138 19056187 -29073708 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 730 23128 88 16 12 chr21 19056187 19057597 -29072298 - L1PB1 LINE L1 -358 6509 5125 2 730 243 0 0 0 chr21 19057597 19057624 -29072271 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 730 23128 96 24 7 chr21 19057624 19062278 -29067617 - L1PB1 LINE L1 -1738 5124 339 2 730 4012 140 27 18 chr21 19062557 19063184 -29066711 + MER41B LTR ERV1 1 633 -1 2 730 2721 27 0 0 chr21 19063674 19063972 -29065923 - AluYf5 SINE Alu -14 298 1 2 730 2342 108 0 0 chr21 19064810 19065116 -29064779 - AluSg7 SINE Alu -6 306 1 2 730 2565 51 3 16 chr21 19065585 19065897 -29063998 - AluY SINE Alu -3 308 1 2 730 1918 135 0 48 chr21 19066413 19066536 -29063359 - AluSx SINE Alu 0 312 186 2 730 7727 71 1 1 chr21 19066536 19067501 -29062394 - LTR5_Hs LTR ERVK -3 965 1 2 730 1918 135 0 48 chr21 19067501 19067692 -29062203 - AluSx SINE Alu -127 185 2 2 730 210 293 95 54 chr21 19067748 19067896 -29061999 + MER5A DNA hAT-Charlie 7 160 -29 2 730 384 22 0 0 chr21 19068030 19068075 -29061820 + (TTTA)n Simple_repeat Simple_repeat 3 47 0 2 730 181 321 16 121 chr21 19068424 19068548 -29061347 + L2c LINE L2 3261 3371 -16 2 730 2101 99 33 18 chr21 19068703 19069033 -29060862 - LTR7B LTR ERV1 0 464 130 2 730 309 91 0 22 chr21 19069033 19069078 -29060817 - LTR7B LTR ERV1 -232 232 189 2 730 674 125 24 32 chr21 19069078 19069202 -29060693 - LTR7B LTR ERV1 -179 285 163 2 730 1501 85 70 140 chr21 19069211 19069511 -29060384 - LTR7B LTR ERV1 -185 279 1 2 730 260 252 88 48 chr21 19069583 19069708 -29060187 - L2a LINE L2 -62 3364 3235 2 730 358 332 78 27 chr21 19069718 19070150 -29059745 - L2a LINE L2 -127 3299 2841 2 730 2170 112 33 3 chr21 19070159 19070462 -29059433 - AluSp SINE Alu 0 313 2 2 730 2344 113 3 0 chr21 19070603 19070912 -29058983 + AluSx3 SINE Alu 1 310 -2 2 730 191 364 23 0 chr21 19070966 19071054 -29058841 - L2a LINE L2 -920 2499 2410 2 730 2099 133 0 0 chr21 19071067 19071352 -29058543 - AluSx SINE Alu -27 285 1 2 730 1831 168 0 30 chr21 19071360 19071663 -29058232 - AluJb SINE Alu -17 295 2 2 730 414 333 0 0 chr21 19071665 19071809 -29058086 - L2a LINE L2 -1000 2419 2276 2 730 1364 197 40 31 chr21 19071916 19072241 -29057654 - MER21B LTR ERVL 0 868 541 2 730 2288 96 3 0 chr21 19072653 19072946 -29056949 - AluSc SINE Alu -12 297 4 2 730 5597 72 23 42 chr21 19073169 19073965 -29055930 - MER4E1 LTR ERV1 0 781 1 2 730 308 151 329 0 chr21 19073982 19074055 -29055840 - MER21B LTR ERVL -311 557 461 2 730 234 61 0 0 chr21 19074053 19074086 -29055809 + Tigger1 DNA TcMar-Tigger 1444 1476 -942 2 730 2090 111 7 14 chr21 19074093 19074381 -29055514 + AluSx SINE Alu 6 291 -21 2 730 2752 164 55 2 chr21 19074388 19074841 -29055054 - MER21B LTR ERVL -391 477 1 2 730 217 304 84 28 chr21 19074854 19074996 -29054899 - L2a LINE L2 -1369 2050 1901 2 730 212 154 0 49 chr21 19075339 19075380 -29054515 + (TATG)n Simple_repeat Simple_repeat 1 39 0 2 730 2370 144 22 79 chr21 19075380 19075834 -29054061 + MSTA LTR ERVL-MaLR 1 428 0 2 730 392 0 21 0 chr21 19075837 19075885 -29054010 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 730 2449 74 3 0 chr21 19075891 19076187 -29053708 - AluSp SINE Alu -15 298 2 2 730 269 100 20 0 chr21 19076299 19076349 -29053546 - L1MB5 LINE L1 -25 6149 6099 2 730 961 108 204 26 chr21 19076349 19076540 -29053355 + MER4D1 LTR ERV1 1 225 -385 2 730 9582 118 38 7 chr21 19076546 19080159 -29049736 + L1PBa1 LINE L1 252 3961 -2901 2 730 963 95 7 7 chr21 19080170 19080308 -29049587 - L1PA11 LINE L1 -2 6172 6035 2 730 859 46 55 0 chr21 19080308 19080417 -29049478 + MER85 DNA PiggyBac 25 139 0 2 730 1086 81 6 18 chr21 19080417 19080581 -29049314 - L1PA11 LINE L1 -121 6053 5892 2 730 2077 134 58 60 chr21 19080584 19081072 -29048823 + MER4D1 LTR ERV1 188 819 -81 2 730 260 196 17 35 chr21 19081072 19081130 -29048765 - L1MB5 LINE L1 -72 6102 6046 2 730 1069 132 0 19 chr21 19081141 19081300 -29048595 + AluJo SINE Alu 144 299 -13 2 730 1177 197 75 18 chr21 19081344 19081623 -29048272 - L1MB5 LINE L1 -178 5996 5702 2 730 8121 162 16 37 chr21 19081592 19084065 -29045830 - L1MB2 LINE L1 -38 6133 3712 2 730 240 181 0 53 chr21 19084615 19084691 -29045204 + CT-rich Low_complexity Low_complexity 4 75 0 2 730 1378 221 5 93 chr21 19084887 19085330 -29044565 - L1MA9 LINE L1 -30 6282 5879 2 730 4918 101 23 1 chr21 19085350 19086041 -29043854 - THE1B-int LTR ERVL-MaLR -874 706 1 2 730 1637 146 151 28 chr21 19086041 19086365 -29043530 - THE1B LTR ERVL-MaLR 0 364 1 2 730 1979 131 25 0 chr21 19087702 19087985 -29041910 - AluSz SINE Alu -22 290 1 2 730 1688 186 21 45 chr21 19088185 19088522 -29041373 - MLT1C LTR ERVL-MaLR -2 465 137 2 730 4696 208 14 181 chr21 19088525 19089205 -29040690 + L1PB4 LINE L1 3001 3646 -2500 2 730 1382 150 0 32 chr21 19089205 19089425 -29040470 - AluSz6 SINE Alu -99 213 1 2 730 4696 208 14 181 chr21 19089425 19090101 -29039794 + L1PB4 LINE L1 3647 4290 -1856 2 730 2673 91 5 39 chr21 19090101 19090140 -29039755 - THE1C LTR ERVL-MaLR 0 375 345 2 730 2393 61 14 7 chr21 19090140 19090436 -29039459 + AluY SINE Alu 1 298 -13 2 730 2673 91 5 39 chr21 19090436 19090784 -29039111 - THE1C LTR ERVL-MaLR -31 344 1 2 730 4696 208 14 181 chr21 19090784 19090948 -29038947 + L1PB4 LINE L1 4291 4450 -1696 2 730 7362 47 4 40 chr21 19090956 19091946 -29037949 - SVA_F Other Other 0 1375 422 2 730 1347 86 6 351 chr21 19092014 19092681 -29037214 - SVA_F Other Other -520 855 419 2 730 2741 83 24 325 chr21 19092745 19093424 -29036471 - SVA_F Other Other -520 855 382 2 730 5151 156 19 17 chr21 19093486 19094951 -29034944 + L1PB4 LINE L1 4435 5903 -253 2 730 2156 100 7 33 chr21 19094951 19095252 -29034643 + AluSx1 SINE Alu 1 293 -19 2 730 4942 148 28 26 chr21 19095252 19095494 -29034401 + L1PB4 LINE L1 5904 6155 -1 2 730 642 204 21 14 chr21 19095494 19095638 -29034257 - MLT1C LTR ERVL-MaLR -319 148 4 2 730 251 378 50 83 chr21 19095847 19096147 -29033748 + L2c LINE L2 2593 2879 -540 2 730 564 152 43 116 chr21 19096147 19096285 -29033610 + FLAM_A SINE Alu 4 131 -11 2 730 251 378 50 83 chr21 19096285 19096405 -29033490 + L2c LINE L2 2880 2999 -420 2 730 635 252 0 0 chr21 19096411 19096546 -29033349 - MER5A1 DNA hAT-Charlie -7 159 25 2 730 433 278 90 107 chr21 19096598 19096944 -29032951 + L2c LINE L2 3038 3377 -10 2 730 336 125 0 18 chr21 19096945 19097002 -29032893 + MER50 LTR ERV1 499 554 -180 2 730 1322 52 0 0 chr21 19097020 19097174 -29032721 - AluY SINE Alu -14 297 144 2 730 741 179 7 40 chr21 19097174 19097325 -29032570 + MER50 LTR ERV1 587 732 -2 2 730 345 180 0 0 chr21 19097325 19097386 -29032509 + MER50-int LTR ERV1 43 103 -7102 2 730 243 146 0 0 chr21 19097388 19097429 -29032466 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 2 730 231 279 0 0 chr21 19097705 19097773 -29032122 - MLT1M LTR ERVL-MaLR -23 649 582 2 730 479 196 20 20 chr21 19098363 19098462 -29031433 + MER63B DNA hAT-Blackjack 312 410 -26 2 730 647 285 286 18 chr21 19098686 19099029 -29030866 - LTR16A LTR ERVL 0 451 17 2 730 2084 272 25 25 chr21 19099552 19100107 -29029788 + MLT1H1 LTR ERVL-MaLR 1 555 0 2 730 1771 149 29 11 chr21 19100167 19100448 -29029447 - AluJb SINE Alu 0 312 27 2 730 296 252 108 16 chr21 19101363 19101492 -29028403 - MIR3 SINE MIR -14 194 54 2 730 221 279 53 18 chr21 19101544 19101657 -29028238 - L2a LINE L2 0 3426 3310 2 730 292 243 14 0 chr21 19102261 19102335 -29027560 + MADE2 DNA TcMar-Mariner 1 75 -5 2 730 213 246 66 0 chr21 19102402 19102463 -29027432 + MIR SINE MIR 87 151 -111 2 730 2530 50 0 7 chr21 19102502 19102805 -29027090 + AluY SINE Alu 1 301 -10 2 730 2498 137 25 0 chr21 19102829 19103222 -29026673 - L1M2 LINE L1 -981 5162 4760 2 730 1075 257 98 10 chr21 19103222 19103529 -29026366 + Arthur1B DNA hAT-Tip100 50 383 -842 2 730 881 244 150 20 chr21 19103555 19104052 -29025843 + Arthur1 DNA hAT-Tip100 503 1070 -155 2 730 848 178 6 52 chr21 19104055 19104271 -29025624 - AluJb SINE Alu 0 312 134 2 730 2458 73 3 3 chr21 19104271 19104573 -29025322 - AluY SINE Alu -9 302 1 2 730 431 210 71 16 chr21 19104607 19104733 -29025162 + Arthur1C DNA hAT-Tip100 222 354 -9 2 730 467 290 58 60 chr21 19105193 19105430 -29024465 + MLT1J LTR ERVL-MaLR 1 276 -236 2 730 359 281 34 36 chr21 19105587 19105770 -29024125 + MIRc SINE MIR 61 243 -25 2 730 1626 211 60 0 chr21 19105832 19106234 -29023661 - L1MD3 LINE L1 0 7995 7570 2 730 2365 125 81 2 chr21 19106249 19106643 -29023252 - MSTA LTR ERVL-MaLR 0 428 4 2 730 231 250 0 0 chr21 19107106 19107158 -29022737 + G-rich Low_complexity Low_complexity 3 54 0 2 730 2567 41 0 3 chr21 19107929 19108223 -29021672 - AluY SINE Alu -18 293 1 2 730 1631 187 32 0 chr21 19109026 19109304 -29020591 - AluJr SINE Alu -25 287 1 2 730 2355 91 0 7 chr21 19109623 19109930 -29019965 - AluSc SINE Alu -4 305 1 2 730 1407 227 59 31 chr21 19110853 19111275 -29018620 - MER57C2 LTR ERV1 0 434 1 2 730 1976 164 125 27 chr21 19111837 19112320 -29017575 - MER39 LTR ERV1 0 707 178 2 730 711 196 9 0 chr21 19112324 19112436 -29017459 + AluJr SINE Alu 6 118 -194 2 730 23 33 0 0 chr21 19112442 19112472 -29017423 + AT_rich Low_complexity Low_complexity 1 30 0 2 730 872 159 94 0 chr21 19112472 19112642 -29017253 - MER39 LTR ERV1 -513 194 9 2 730 236 222 18 18 chr21 19113945 19114000 -29015895 - MER34C2 LTR ERV1 -4 583 529 2 730 3504 141 27 10 chr21 19113991 19114627 -29015268 - MER39B LTR ERV1 -23 630 1 2 730 6532 161 31 41 chr21 19114683 19116111 -29013784 - LTR49-int LTR ERV1 -148 6183 4769 2 730 1404 192 14 24 chr21 19116107 19116395 -29013500 - LTR49-int LTR ERV1 -6046 285 1 2 730 2876 156 45 155 chr21 19116399 19116476 -29013419 - MER39B LTR ERV1 -3 650 564 2 730 1705 169 24 7 chr21 19116476 19116766 -29013129 - AluJr SINE Alu -16 296 2 2 730 2876 156 45 155 chr21 19116766 19116970 -29012925 - MER39B LTR ERV1 -90 563 438 2 730 2360 98 0 22 chr21 19116970 19117285 -29012610 + AluY SINE Alu 1 308 -3 2 730 1717 104 30 0 chr21 19117285 19117514 -29012381 + AluSx1 SINE Alu 73 309 -3 2 730 2876 156 45 155 chr21 19117514 19117793 -29012102 - MER39B LTR ERV1 -216 437 178 2 730 2650 56 0 3 chr21 19117793 19118099 -29011796 - AluY SINE Alu -6 305 1 2 730 2876 156 45 155 chr21 19118099 19118265 -29011630 - MER39B LTR ERV1 -476 177 1 2 730 768 201 75 79 chr21 19118265 19118530 -29011365 - MER39 LTR ERV1 -77 630 367 2 730 600 232 171 26 chr21 19119177 19119706 -29010189 - MER34C2 LTR ERV1 -13 558 1 2 730 262 291 48 10 chr21 19119873 19119977 -29009918 - MamGypLTR3 LTR Gypsy -17 822 715 2 730 245 250 0 0 chr21 19120214 19120274 -29009621 - L4 LINE RTE -1783 246 187 2 730 277 163 0 0 chr21 19120338 19120387 -29009508 + T-rich Low_complexity Low_complexity 1 49 0 2 730 24900 42 1 1 chr21 19120388 19124585 -29005310 - L1PA4 LINE L1 -3 6152 1957 2 730 676 314 101 48 chr21 19125324 19125682 -29004213 + L4 LINE RTE 74 450 -1579 2 730 216 158 0 0 chr21 19125853 19125891 -29004004 + (TATG)n Simple_repeat Simple_repeat 3 40 0 2 730 3154 149 143 8 chr21 19125894 19126517 -29003378 + MER39 LTR ERV1 1 707 0 2 730 207 294 29 0 chr21 19126519 19126587 -29003308 + (TATG)n Simple_repeat Simple_repeat 2 71 0 2 730 757 286 136 45 chr21 19126662 19127236 -29002659 - L1MC4a LINE L1 -1915 5967 5342 2 730 30 0 0 0 chr21 19127502 19127532 -29002363 + AT_rich Low_complexity Low_complexity 1 30 0 2 730 1755 196 14 3 chr21 19127549 19127845 -29002050 - AluJb SINE Alu -11 301 3 2 730 228 256 62 37 chr21 19127929 19128010 -29001885 - L1M5 LINE L1 -1200 4946 4864 2 730 1772 186 0 0 chr21 19128042 19128327 -29001568 - AluJr SINE Alu -25 287 3 2 730 1983 162 0 7 chr21 19128335 19128638 -29001257 - AluJb SINE Alu -11 301 1 2 730 1109 145 0 17 chr21 19128953 19129042 -29000853 - AluSx SINE Alu -5 307 220 2 730 10472 72 106 1 chr21 19129042 19130470 -28999425 - LTR12C LTR ERV1 0 1579 1 2 730 1109 145 0 17 chr21 19130470 19130555 -28999340 - AluSx SINE Alu -93 219 136 2 730 1755 168 96 23 chr21 19130667 19131030 -28998865 + MER39 LTR ERV1 1 444 -263 2 730 1864 201 55 24 chr21 19131030 19131449 -28998446 + MSTB1 LTR ERVL-MaLR 1 432 0 2 730 1755 180 121 30 chr21 19131449 19131697 -28998198 + MER39 LTR ERV1 445 707 0 2 730 282 179 15 0 chr21 19131860 19131927 -28997968 - L1MA8 LINE L1 -2 6289 6222 2 730 337 136 0 0 chr21 19131928 19131972 -28997923 - AluYc SINE Alu -255 44 1 2 730 3225 175 35 17 chr21 19132033 19132726 -28997169 + MER67C LTR ERV1 7 711 0 2 730 806 246 61 64 chr21 19132735 19133031 -28996864 + MLT1J LTR ERVL-MaLR 218 512 0 2 730 1496 361 88 19 chr21 19133032 19133948 -28995947 + L4 LINE RTE 749 1728 -301 2 730 1489 238 49 3 chr21 19134158 19134504 -28995391 + MLT1A0 LTR ERVL-MaLR 1 362 -3 2 730 951 170 7 7 chr21 19134971 19135124 -28994771 - AluJr SINE Alu -4 308 156 2 730 327 321 94 35 chr21 19135160 19135502 -28994393 - L1MC4a LINE L1 -1981 5901 5540 2 731 255 31 0 0 chr21 19136850 19136882 -28993013 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 731 668 223 138 6 chr21 19137044 19137211 -28992684 - MER5A DNA hAT-Charlie 0 189 1 2 731 75 45 0 0 chr21 19137674 19137784 -28992111 + AT_rich Low_complexity Low_complexity 1 110 0 2 731 430 210 70 0 chr21 19137784 19137884 -28992011 - MER45A DNA hAT-Tip100 -61 117 11 2 731 248 220 0 0 chr21 19138093 19138143 -28991752 + MER5A DNA hAT-Charlie 9 58 -131 2 731 21 0 0 56 chr21 19138410 19138427 -28991468 + AT_rich Low_complexity Low_complexity 1 16 0 2 731 2626 61 0 3 chr21 19138427 19138739 -28991156 + AluY SINE Alu 1 311 0 2 731 21 0 0 56 chr21 19138739 19138757 -28991138 + AT_rich Low_complexity Low_complexity 1 18 0 2 731 22 70 0 0 chr21 19138774 19138817 -28991078 + AT_rich Low_complexity Low_complexity 1 43 0 2 731 185 333 102 20 chr21 19138848 19138946 -28990949 + L2c LINE L2 3282 3387 0 2 731 217 283 19 0 chr21 19139237 19139290 -28990605 + MIRc SINE MIR 83 136 -132 2 731 1566 187 20 22 chr21 19139369 19139724 -28990171 - MLT1A0 LTR ERVL-MaLR -11 354 1 2 731 21897 86 10 18 chr21 19142070 19148521 -28981374 - L1PA7 LINE L1 0 6469 2 2 731 491 256 115 5 chr21 19148957 19149149 -28980746 + MIR SINE MIR 22 234 -28 2 731 24 32 0 0 chr21 19149163 19149194 -28980701 + AT_rich Low_complexity Low_complexity 1 31 0 2 731 246 62 0 0 chr21 19149303 19149335 -28980560 + (TATG)n Simple_repeat Simple_repeat 4 35 0 2 731 686 284 110 0 chr21 19150122 19150358 -28979537 + MIR SINE MIR 1 262 0 2 731 38 22 0 0 chr21 19150704 19150749 -28979146 + AT_rich Low_complexity Low_complexity 1 45 0 2 731 2460 94 3 0 chr21 19150796 19151105 -28978790 - AluSq2 SINE Alu -2 310 1 2 731 539 245 14 0 chr21 19151178 19151317 -28978578 - L1MC4 LINE L1 -658 7384 7244 2 731 1033 239 199 19 chr21 19151323 19151847 -28978048 - L1MC4 LINE L1 -957 7085 6468 2 731 444 209 27 18 chr21 19151891 19152003 -28977892 + MER4A LTR ERV1 1 113 -551 2 731 1423 262 52 62 chr21 19152025 19152607 -28977288 + LTR34 LTR ERV1 104 679 -20 2 731 210 71 0 0 chr21 19154229 19154257 -28975638 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 2 731 1778 169 41 19 chr21 19155388 19155755 -28974140 + MLT2D LTR ERVL 38 412 -2 2 731 410 234 58 99 chr21 19155755 19155978 -28973917 - Charlie18a DNA hAT-Charlie -59 283 70 2 731 439 200 183 8 chr21 19156401 19156532 -28973363 - MIR3 SINE MIR -14 194 41 2 731 200 348 142 43 chr21 19157341 19157783 -28972112 + L2 LINE L2 1433 1928 -1491 2 731 2029 202 23 15 chr21 19157783 19158176 -28971719 - MSTD LTR ERVL-MaLR 0 396 1 2 731 200 348 142 43 chr21 19158176 19158331 -28971564 + L2 LINE L2 1929 2089 -1330 2 731 1981 162 0 22 chr21 19158610 19158925 -28970970 - AluJr SINE Alu 0 312 5 2 731 256 228 148 0 chr21 19159154 19159255 -28970640 - MLT1N2 LTR ERVL-MaLR -10 552 437 2 731 783 264 83 69 chr21 19160333 19160621 -28969274 + L1ME2 LINE L1 5711 5977 -187 2 731 2305 103 3 0 chr21 19160621 19160913 -28968982 + AluSx SINE Alu 1 293 -19 2 731 783 264 83 69 chr21 19160913 19161072 -28968823 + L1ME2 LINE L1 5978 6164 0 2 731 306 0 0 0 chr21 19161570 19161604 -28968291 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 731 23 0 0 0 chr21 19161841 19161864 -28968031 + AT_rich Low_complexity Low_complexity 1 23 0 2 731 26 0 0 0 chr21 19165313 19165339 -28964556 + AT_rich Low_complexity Low_complexity 1 26 0 2 731 452 302 167 38 chr21 19166276 19166486 -28963409 + MIR SINE MIR 29 268 0 2 731 368 287 60 9 chr21 19166495 19166611 -28963284 + MIRb SINE MIR 35 156 -112 2 731 498 247 38 63 chr21 19166664 19166979 -28962916 + L1MC5 LINE L1 7630 7936 -25 2 731 1202 157 267 4 chr21 19167101 19167337 -28962558 + AluJb SINE Alu 1 298 -14 2 731 375 248 134 43 chr21 19167753 19167789 -28962106 - MER112 DNA hAT-Charlie -5 256 224 2 731 2006 143 13 7 chr21 19167789 19168089 -28961806 - AluJo SINE Alu -10 302 1 2 731 375 248 134 43 chr21 19168089 19168284 -28961611 - MER112 DNA hAT-Charlie -38 223 4 2 731 35 0 0 0 chr21 19170224 19170259 -28959636 + AT_rich Low_complexity Low_complexity 1 35 0 2 731 21 36 0 0 chr21 19170642 19170670 -28959225 + AT_rich Low_complexity Low_complexity 1 28 0 2 731 193 324 54 85 chr21 19171634 19171951 -28957944 + L2b LINE L2 2409 2715 -704 2 731 373 341 211 18 chr21 19171933 19172160 -28957735 + L2b LINE L2 3104 3374 -1 2 731 23 0 0 0 chr21 19172162 19172185 -28957710 + AT_rich Low_complexity Low_complexity 1 23 0 2 731 4345 62 74 71 chr21 19173215 19173591 -28956304 + L1PA7 LINE L1 5491 5913 -241 2 731 2642 48 0 0 chr21 19173591 19173886 -28956009 - AluY SINE Alu -16 295 1 2 731 4345 62 74 71 chr21 19173886 19174170 -28955725 + L1PA7 LINE L1 5914 6153 -1 2 731 1887 149 0 11 chr21 19174488 19174763 -28955132 - AluSx SINE Alu -23 289 18 2 731 182 333 17 0 chr21 19175310 19175370 -28954525 - L3b LINE CR1 -22 4486 4426 2 731 1674 176 34 20 chr21 19175555 19175850 -28954045 + AluJb SINE Alu 1 299 -13 2 731 813 181 109 21 chr21 19177351 19177543 -28952352 + MER3 DNA hAT-Charlie 1 209 0 2 731 2259 112 0 0 chr21 19177644 19177929 -28951966 - AluSq2 SINE Alu -26 286 2 2 731 2163 112 0 4 chr21 19178873 19179149 -28950746 + AluSx1 SINE Alu 1 275 -37 2 731 1362 160 220 8 chr21 19179440 19179770 -28950125 + MSTA LTR ERVL-MaLR 1 381 0 2 731 5725 169 22 39 chr21 19179772 19180925 -28948970 + MSTA-int LTR ERVL-MaLR 3 1135 -445 2 731 1155 127 29 19 chr21 19180925 19181133 -28948762 + MSTA-int LTR ERVL-MaLR 1371 1580 0 2 731 1778 150 161 6 chr21 19181133 19181494 -28948401 + MSTA LTR ERVL-MaLR 1 417 -11 2 731 465 265 76 6 chr21 19181959 19182130 -28947765 + L2a LINE L2 3240 3422 -4 2 731 22 35 0 0 chr21 19182595 19182624 -28947271 + AT_rich Low_complexity Low_complexity 1 29 0 2 731 423 298 63 17 chr21 19183451 19183643 -28946252 + MIR SINE MIR 45 239 -29 2 731 1644 157 121 77 chr21 19184659 19184844 -28945051 + MSTD LTR ERVL-MaLR 1 171 -225 2 731 2566 80 0 0 chr21 19184844 19185155 -28944740 + AluY SINE Alu 1 311 0 2 731 1644 157 121 77 chr21 19185155 19185348 -28944547 + MSTD LTR ERVL-MaLR 172 396 0 2 731 1050 157 68 5 chr21 19185930 19186122 -28943773 - Tigger4a DNA TcMar-Tigger 0 236 33 2 731 462 274 120 0 chr21 19186181 19186298 -28943597 + FLAM_A SINE Alu 10 140 -2 2 731 2632 134 21 9 chr21 19186756 19187179 -28942716 - MSTA LTR ERVL-MaLR 0 428 1 2 731 2289 105 7 0 chr21 19187981 19188275 -28941620 - AluSp SINE Alu -17 296 1 2 731 583 339 34 8 chr21 19188831 19189066 -28940829 + MIR SINE MIR 1 241 -21 2 731 341 242 123 15 chr21 19189061 19189191 -28940704 + MIR3 SINE MIR 63 206 -2 2 731 714 169 0 17 chr21 19189296 19189414 -28940481 - FLAM_A SINE Alu -6 136 21 2 731 22 0 0 0 chr21 19189971 19189993 -28939902 + AT_rich Low_complexity Low_complexity 1 22 0 2 731 21 36 0 0 chr21 19191694 19191722 -28938173 + GC_rich Low_complexity Low_complexity 1 28 0 2 731 24 32 0 0 chr21 19191986 19192017 -28937878 + GC_rich Low_complexity Low_complexity 1 31 0 2 731 323 280 173 16 chr21 19192371 19192556 -28937339 - MIRc SINE MIR -46 222 9 2 731 722 254 0 0 chr21 19192722 19192887 -28937008 + MER5A1 DNA hAT-Charlie 1 165 -1 2 731 882 258 77 6 chr21 19193178 19193502 -28936393 - L1ME2 LINE L1 -10 6154 5808 2 731 1415 148 4 4 chr21 19193503 19193741 -28936154 - MSTB1 LTR ERVL-MaLR -1 431 194 2 731 32 0 0 0 chr21 19193750 19193782 -28936113 + AT_rich Low_complexity Low_complexity 1 32 0 2 731 385 246 20 80 chr21 19193782 19193932 -28935963 - MSTB1 LTR ERVL-MaLR -239 187 47 2 731 1824 178 3 13 chr21 19193935 19194239 -28935656 + AluSz SINE Alu 5 305 -7 2 731 1842 226 159 12 chr21 19194239 19194755 -28935140 + MLT1E2 LTR ERVL-MaLR 27 618 -9 2 731 311 342 86 68 chr21 19194783 19195414 -28934481 - L1MEc LINE L1 -5649 751 110 2 731 997 128 64 0 chr21 19195415 19195571 -28934324 + THE1B LTR ERVL-MaLR 199 364 0 2 731 1952 137 79 0 chr21 19195747 19196128 -28933767 - Tigger3 DNA TcMar-Tigger -150 2879 2469 2 731 1983 163 104 15 chr21 19196130 19196523 -28933372 - MSTA LTR ERVL-MaLR 0 428 1 2 731 4010 110 24 14 chr21 19196523 19197161 -28932734 - MSTA-int LTR ERVL-MaLR 0 1580 937 2 731 2029 138 152 8 chr21 19197909 19198283 -28931612 + MSTA LTR ERVL-MaLR 1 428 0 2 731 305 252 37 96 chr21 19198741 19198808 -28931087 - MLT1J2 LTR ERVL-MaLR -9 503 441 2 731 2078 139 0 13 chr21 19198808 19199111 -28930784 + AluJb SINE Alu 1 299 -13 2 731 305 252 37 96 chr21 19199111 19199179 -28930716 - MLT1J2 LTR ERVL-MaLR -72 440 376 2 731 519 243 19 0 chr21 19199205 19199312 -28930583 - AluSz6 SINE Alu -6 306 198 2 731 301 255 105 11 chr21 19199336 19199431 -28930464 - MLT1J LTR ERVL-MaLR -408 104 1 2 731 1975 145 3 3 chr21 19199545 19199827 -28930068 + AluSc SINE Alu 1 282 -27 2 731 189 0 0 0 chr21 19199827 19199848 -28930047 + (TAA)n Simple_repeat Simple_repeat 2 22 0 2 731 2540 156 2 38 chr21 19200542 19200990 -28928905 - MER57A1 LTR ERV1 0 432 1 2 731 391 359 42 0 chr21 19201119 19201261 -28928634 - L2a LINE L2 0 3426 3279 2 731 556 307 93 78 chr21 19201643 19202042 -28927853 - MLT1J2 LTR ERVL-MaLR -43 405 1 2 731 2116 249 95 39 chr21 19202115 19202918 -28926977 - MLT1J2-int LTR ERVL-MaLR -51 1336 489 2 731 692 282 92 53 chr21 19202987 19203085 -28926810 + L2a LINE L2 3132 3250 -176 2 731 237 83 0 0 chr21 19203085 19203121 -28926774 + (TA)n Simple_repeat Simple_repeat 2 37 0 2 731 692 282 92 53 chr21 19203121 19203306 -28926589 + L2a LINE L2 3251 3426 0 2 731 384 315 133 67 chr21 19203489 19203654 -28926241 + MLT1L LTR ERVL-MaLR 147 321 -289 2 731 1891 141 3 11 chr21 19203654 19203938 -28925957 - AluJo SINE Alu -4 308 27 2 731 384 315 133 67 chr21 19203938 19204207 -28925688 + MLT1L LTR ERVL-MaLR 322 610 0 2 731 266 331 98 35 chr21 19204268 19204414 -28925481 - L2b LINE L2 -1 3425 3250 2 731 1797 130 0 0 chr21 19205226 19205464 -28924431 + AluSz SINE Alu 6 243 -69 2 731 2674 37 0 3 chr21 19205746 19206044 -28923851 - AluY SINE Alu -14 297 1 2 731 250 374 10 0 chr21 19206635 19206734 -28923161 + L2b LINE L2 3219 3318 -57 2 731 763 154 21 14 chr21 19207304 19207449 -28922446 - LTR23 LTR ERV1 -1 436 291 2 731 474 91 13 0 chr21 19207448 19207525 -28922370 - LTR23 LTR ERV1 -356 81 4 2 731 1158 326 62 21 chr21 19208112 19208727 -28921168 - PRIMA4-int LTR ERV1 -1992 6278 5639 2 731 8745 162 70 78 chr21 19208746 19211735 -28918160 - LTR49-int LTR ERV1 -2709 3622 1558 2 731 263 49 24 0 chr21 19212706 19212747 -28917148 + (CAAAAA)n Simple_repeat Simple_repeat 2 43 0 2 731 1835 155 52 140 chr21 19212950 19213429 -28916466 - LTR23 LTR ERV1 0 437 1 2 731 1756 258 98 22 chr21 19213645 19214225 -28915670 + LTR87 LTR ERVL? 1 624 0 2 731 1729 238 79 57 chr21 19214788 19215487 -28914408 - L1ME2 LINE L1 -3 6161 5448 2 731 992 252 19 38 chr21 19215482 19215759 -28914136 + L1ME2 LINE L1 5030 5309 -837 2 731 2468 86 0 0 chr21 19215759 19216062 -28913833 + AluY SINE Alu 1 303 -8 2 731 992 226 35 76 chr21 19216062 19216176 -28913719 + L1M5 LINE L1 5310 5418 -746 2 731 275 241 18 9 chr21 19216396 19216505 -28913390 + MERX DNA TcMar-Tigger 578 687 -69 2 731 795 204 39 0 chr21 19216821 19217002 -28912893 - MER20 DNA hAT-Charlie -3 216 29 2 731 1140 130 336 64 chr21 19217071 19217366 -28912529 - THE1C LTR ERVL-MaLR 0 375 1 2 731 258 347 7 20 chr21 19217711 19217858 -28912037 - MamGypLTR2b LTR Gypsy -4 918 774 2 731 216 318 15 0 chr21 19219095 19219161 -28910734 - L2a LINE L2 -1 3425 3359 2 731 637 336 62 36 chr21 19219441 19219827 -28910068 + MLT1N2 LTR ERVL-MaLR 10 405 -157 2 731 306 246 0 0 chr21 19219890 19219955 -28909940 + MER31B LTR ERV1 4 68 -398 2 731 654 262 107 70 chr21 19219967 19220592 -28909303 + MER67A LTR ERV1 1 661 0 2 731 1305 244 139 21 chr21 19220592 19221023 -28908872 - MLT1H LTR ERVL-MaLR -26 523 42 2 731 1070 195 69 20 chr21 19221261 19221564 -28908331 - MER33 DNA hAT-Charlie 0 324 7 2 731 2359 83 0 27 chr21 19221691 19221991 -28907904 - AluSc SINE Alu -17 292 1 2 731 899 314 152 9 chr21 19222021 19222362 -28907533 - LTR16E1 LTR ERVL -1 537 148 2 731 1837 167 29 23 chr21 19222496 19222846 -28907049 - MLT1A0 LTR ERVL-MaLR 0 365 14 2 731 197 337 57 19 chr21 19222852 19222958 -28906937 - MIRb SINE MIR -87 181 72 2 731 2159 142 3 3 chr21 19223954 19224265 -28905630 + AluJb SINE Alu 2 312 0 2 731 2933 298 107 19 chr21 19225393 19225576 -28904319 + L2 LINE L2 1221 1421 -1998 2 731 2059 144 13 0 chr21 19225576 19225882 -28904013 - AluSz6 SINE Alu -1 311 2 2 731 2933 298 107 19 chr21 19225882 19226859 -28903036 + L2 LINE L2 1422 2482 -937 2 731 675 151 8 8 chr21 19226865 19226992 -28902903 - L1MB8 LINE L1 -13 6165 6039 2 731 334 113 0 0 chr21 19226998 19227051 -28902844 - L1MB8 LINE L1 -235 5943 5891 2 731 3614 139 21 59 chr21 19227051 19227764 -28902131 + Ricksha_c DNA MuDR 1359 2044 -4 2 731 1671 176 43 0 chr21 19227771 19228094 -28901801 - L1MB8 LINE L1 -281 5897 5561 2 731 1357 254 112 18 chr21 19228103 19228601 -28901294 + L2 LINE L2 2265 2809 -610 2 731 268 167 0 0 chr21 19228618 19228666 -28901229 + Ricksha_0 DNA MuDR 1680 1727 -6 2 731 442 280 249 7 chr21 19228666 19228947 -28900948 + LTR16C LTR ERVL 131 479 -10 2 731 448 343 49 118 chr21 19229081 19229414 -28900481 + MLT1N2 LTR ERVL-MaLR 53 347 -215 2 731 1174 200 27 68 chr21 19229414 19229443 -28900452 - MER33 DNA hAT-Charlie 0 324 307 2 731 2237 124 0 6 chr21 19229443 19229758 -28900137 + AluSq SINE Alu 1 313 0 2 731 1174 200 27 68 chr21 19229758 19230066 -28899829 - MER33 DNA hAT-Charlie -18 306 1 2 731 448 343 49 118 chr21 19230066 19230267 -28899628 + MLT1N2 LTR ERVL-MaLR 348 550 -12 2 731 350 288 50 29 chr21 19230362 19230550 -28899345 + MLT1I LTR ERVL-MaLR 1 186 -303 2 731 1721 123 30 30 chr21 19231211 19231513 -28898382 + L1PA10 LINE L1 5867 6168 0 2 731 442 266 7 52 chr21 19231540 19231675 -28898220 - L1ME1 LINE L1 -20 6159 6031 2 731 253 309 75 40 chr21 19232006 19232205 -28897690 + ERVL-E-int LTR ERVL 866 1071 -4596 2 731 231 36 0 0 chr21 19232515 19232543 -28897352 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 2 731 1065 295 128 16 chr21 19232543 19232710 -28897185 - L2a LINE L2 -16 3410 3236 2 731 3867 120 30 13 chr21 19232710 19233310 -28896585 - MER4B LTR ERV1 0 610 1 2 731 1065 295 128 16 chr21 19233310 19233586 -28896309 - L2a LINE L2 -191 3235 2917 2 731 1521 290 70 25 chr21 19233653 19234286 -28895609 + ERVL-E-int LTR ERVL 3355 4015 -1652 2 731 388 248 73 40 chr21 19234461 19234612 -28895283 + ERVL-E-int LTR ERVL 4363 4518 -1196 2 731 532 341 84 51 chr21 19234652 19235066 -28894829 + ERVL-E-int LTR ERVL 4534 4961 -706 2 731 369 0 0 0 chr21 19235388 19235429 -28894466 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 731 35 0 0 0 chr21 19235429 19235464 -28894431 + AT_rich Low_complexity Low_complexity 1 35 0 2 731 1396 183 4 21 chr21 19235473 19235714 -28894181 - AluJb SINE Alu -75 237 1 2 731 663 294 51 18 chr21 19235725 19235999 -28893896 - L1MEg LINE L1 -5784 300 18 2 731 383 258 109 36 chr21 19236023 19236216 -28893679 + L2a LINE L2 3220 3426 0 2 731 1727 185 0 23 chr21 19236562 19236865 -28893030 + AluJb SINE Alu 1 296 -16 2 731 2258 107 3 19 chr21 19236990 19237298 -28892597 + AluSx4 SINE Alu 1 303 -9 2 731 236 367 17 0 chr21 19237715 19237835 -28892060 + LTR90B LTR LTR 100 221 -575 2 731 1988 153 0 13 chr21 19237862 19238169 -28891726 - AluJr SINE Alu -9 303 1 2 731 255 318 77 13 chr21 19238234 19238390 -28891505 - MLT1J LTR ERVL-MaLR -5 507 342 2 731 332 266 21 92 chr21 19238703 19238844 -28891051 - L2c LINE L2 -11 3376 3246 2 731 1112 173 24 0 chr21 19238861 19239069 -28890826 - MER61A LTR ERV1 0 341 129 2 731 269 303 188 35 chr21 19239081 19239283 -28890612 - L2c LINE L2 -164 3223 2991 2 731 7705 86 11 2 chr21 19239314 19241224 -28888671 + L1PA8A LINE L1 4208 6129 -2 2 731 673 332 74 47 chr21 19241301 19241772 -28888123 - L2c LINE L2 -556 2863 2380 2 731 2761 158 16 104 chr21 19241791 19242356 -28887539 - MLT2B2 LTR ERVL 0 515 1 2 731 2122 180 58 2 chr21 19242356 19242818 -28887077 - ERVL-int LTR ERVL 0 5757 5270 2 731 1563 146 142 0 chr21 19242820 19243108 -28886787 - ERVL-int LTR ERVL -688 5069 4741 2 731 10932 163 58 8 chr21 19243103 19245311 -28884584 - ERVL-B4-int LTR ERVL -2281 3433 1116 2 731 24 0 0 0 chr21 19245312 19245336 -28884559 + AT_rich Low_complexity Low_complexity 1 24 0 2 731 261 355 39 56 chr21 19245338 19245571 -28884324 - L1M5 LINE L1 -1165 4981 4753 2 731 36 23 0 0 chr21 19245583 19245626 -28884269 + AT_rich Low_complexity Low_complexity 1 43 0 2 731 522 256 97 31 chr21 19245703 19246086 -28883809 - L1M5 LINE L1 -1443 4703 4296 2 731 1529 209 7 27 chr21 19246116 19246413 -28883482 - AluJo SINE Alu -21 291 1 2 731 5318 172 35 60 chr21 19246413 19247567 -28882328 - ERVL-B4-int LTR ERVL -4589 1125 1 2 731 2331 219 18 18 chr21 19247572 19248087 -28881808 - MLT2B1 LTR ERVL -5 515 1 2 731 240 348 21 7 chr21 19248087 19248229 -28881666 - L2c LINE L2 -1061 2358 2215 2 731 455 379 72 75 chr21 19248297 19248753 -28881142 - L2b LINE L2 -11 3364 2910 2 731 428 280 95 45 chr21 19249058 19249279 -28880616 + MLT1K LTR ERVL-MaLR 334 565 -30 2 731 2335 236 73 87 chr21 19249347 19250479 -28879416 + L1ME3A LINE L1 4374 5484 -689 2 731 1825 118 106 0 chr21 19250479 19250758 -28879137 + AluSg4 SINE Alu 1 312 0 2 731 2335 260 79 20 chr21 19250758 19251395 -28878500 + L1ME3A LINE L1 5485 6166 -7 2 731 2518 74 0 13 chr21 19251662 19251973 -28877922 + AluSx SINE Alu 1 307 -5 2 731 442 335 19 24 chr21 19252339 19252544 -28877351 + MamGypLTR2c LTR Gypsy 315 518 -550 2 731 1082 178 44 0 chr21 19252551 19252731 -28877164 + AluJb SINE Alu 124 311 -1 2 731 215 261 51 102 chr21 19253080 19253178 -28876717 + L2c LINE L2 3295 3387 0 2 731 198 150 0 0 chr21 19253673 19253713 -28876182 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 731 1775 79 16 4 chr21 19254170 19254412 -28875483 + L1PA7 LINE L1 5907 6151 -3 2 731 2370 109 0 3 chr21 19254489 19254801 -28875094 - AluY SINE Alu 0 311 1 2 731 1004 331 55 62 chr21 19254837 19254971 -28874924 - L4 LINE RTE -12 2017 1891 2 731 2045 143 10 0 chr21 19254971 19255271 -28874624 + AluJb SINE Alu 1 303 -9 2 731 1004 331 55 62 chr21 19255271 19255648 -28874247 - L4 LINE RTE -139 1890 1510 2 731 392 284 0 0 chr21 19255979 19256081 -28873814 + MER103C DNA hAT-Charlie 139 240 -57 2 731 2556 49 0 23 chr21 19256553 19256858 -28873037 - AluSc8 SINE Alu -14 298 1 2 731 199 328 156 25 chr21 19257312 19257550 -28872345 + L2c LINE L2 2969 3237 -150 2 731 579 211 13 114 chr21 19258604 19258840 -28871055 - LTR81A LTR Gypsy -1014 336 125 2 731 620 331 12 16 chr21 19259064 19259307 -28870588 + MLT1J2 LTR ERVL-MaLR 37 278 -170 2 731 737 223 51 39 chr21 19259326 19259599 -28870296 + Charlie4a DNA hAT-Charlie 78 354 -154 2 731 1757 165 43 7 chr21 19259599 19259878 -28870017 + AluJr4 SINE Alu 1 289 -23 2 731 737 223 51 39 chr21 19259878 19259936 -28869959 + Charlie4a DNA hAT-Charlie 355 413 -95 2 731 523 251 73 12 chr21 19260157 19260322 -28869573 - MER105 DNA DNA -29 175 1 2 731 26 0 0 0 chr21 19261234 19261260 -28868635 + AT_rich Low_complexity Low_complexity 1 26 0 2 731 1234 204 75 58 chr21 19261484 19261933 -28867962 + MLT2B4 LTR ERVL 4 464 0 2 731 1893 113 84 0 chr21 19263402 19263677 -28866218 - AluSz SINE Alu -14 298 1 2 731 621 51 0 0 chr21 19264030 19264109 -28865786 + MADE1 DNA TcMar-Mariner 1 79 -1 2 731 653 272 137 39 chr21 19265267 19265604 -28864291 + MLT1J2 LTR ERVL-MaLR 1 370 -78 2 731 578 264 181 51 chr21 19265803 19266310 -28863585 - L1MC4 LINE L1 0 8042 7470 2 91 21603 104 16 21 chr21 19266853 19267640 -28862255 - L1PB1 LINE L1 -2 6865 6083 2 732 2364 104 0 0 chr21 19267640 19267939 -28861956 - AluY SINE Alu -12 299 1 2 732 21603 90 31 7 chr21 19267939 19271992 -28857903 - L1PB1 LINE L1 -780 6082 1880 2 732 2726 88 95 5 chr21 19271992 19272403 -28857492 - LTR7 LTR ERV1 -2 448 1 2 732 10590 106 3 6 chr21 19272403 19274040 -28855855 - L1PB1 LINE L1 -4984 1879 251 2 732 2748 42 0 0 chr21 19274481 19274792 -28855103 - AluY SINE Alu 0 311 1 2 732 1901 186 10 37 chr21 19274797 19275200 -28854695 + MLT2C1 LTR ERVL 6 397 0 2 732 258 345 72 19 chr21 19275640 19275847 -28854048 - Tigger16b DNA TcMar-Tigger -63 274 57 2 732 1339 250 34 29 chr21 19276170 19276254 -28853641 + MER63B DNA hAT-Blackjack 27 109 -327 2 732 1946 141 3 30 chr21 19276254 19276551 -28853344 + AluJr SINE Alu 1 289 -23 2 732 1339 250 34 29 chr21 19276551 19276874 -28853021 + MER63B DNA hAT-Blackjack 110 436 0 2 732 312 289 105 73 chr21 19276964 19277007 -28852888 - L2a LINE L2 0 3426 3391 2 732 1720 249 20 13 chr21 19277007 19277466 -28852429 + LTR40b LTR ERVL 1 462 0 2 732 312 289 105 73 chr21 19277466 19277736 -28852159 - L2a LINE L2 -36 3390 3103 2 732 899 123 0 8 chr21 19277784 19277914 -28851981 + FLAM_C SINE Alu 2 130 -13 2 732 2000 90 6 121 chr21 19278720 19279052 -28850843 + AluSx1 SINE Alu 1 294 -18 2 732 245 242 91 0 chr21 19279410 19279476 -28850419 - MIR3 SINE MIR -124 144 73 2 732 2456 83 0 0 chr21 19279947 19280248 -28849647 + AluY SINE Alu 1 301 -10 2 732 13017 32 5 0 chr21 19280409 19282797 -28847098 - L1PA3 LINE L1 -2 6153 3756 2 732 29 70 0 0 chr21 19282849 19282906 -28846989 + AT_rich Low_complexity Low_complexity 1 57 0 2 732 355 148 97 201 chr21 19283341 19283402 -28846493 + MER63B DNA hAT-Blackjack 308 369 -67 2 732 2480 50 0 0 chr21 19283402 19283684 -28846211 + AluY SINE Alu 30 311 0 2 732 355 148 97 201 chr21 19283684 19283766 -28846129 + MER63B DNA hAT-Blackjack 370 436 0 2 732 738 226 11 103 chr21 19284150 19284260 -28845635 + MER96B DNA hAT 2 86 -331 2 732 1376 145 7 61 chr21 19284260 19284450 -28845445 - L1PB2 LINE L1 -2 6149 5972 2 732 2660 46 0 10 chr21 19284450 19284757 -28845138 - AluY SINE Alu -7 304 1 2 732 1376 145 7 61 chr21 19284757 19284845 -28845050 - L1PB2 LINE L1 -180 5971 5886 2 732 738 226 11 103 chr21 19284845 19285005 -28844890 + MER96B DNA hAT 87 247 -170 2 732 503 306 142 18 chr21 19285655 19285881 -28844014 - MIRb SINE MIR -8 260 7 2 732 356 204 11 0 chr21 19286038 19286126 -28843769 + Tigger12c DNA TcMar-Tigger 249 337 -397 2 732 1062 252 45 0 chr21 19286430 19286696 -28843199 - MLT1A0 LTR ERVL-MaLR -6 359 82 2 732 1094 235 26 18 chr21 19286700 19286973 -28842922 + MER21B LTR ERVL 157 431 -437 2 732 245 292 82 37 chr21 19287575 19287710 -28842185 - CR1_Mam LINE CR1 -1412 792 652 2 732 225 226 40 114 chr21 19287789 19287964 -28841931 + MamGypLTR1c LTR Gypsy 40 201 -602 2 732 226 350 0 0 chr21 19288046 19288106 -28841789 + MamGypLTR1c LTR Gypsy 350 409 -404 2 732 308 265 22 103 chr21 19288383 19288610 -28841285 + MamGypLTR1c LTR Gypsy 480 692 -121 2 732 296 323 61 48 chr21 19288620 19289143 -28840752 - L1M5 LINE L1 -1195 4951 4422 2 732 562 239 6 43 chr21 19289147 19289272 -28840623 - LTR33 LTR ERVL 0 515 395 2 732 2635 198 10 25 chr21 19289272 19289795 -28840100 + MLT2B2 LTR ERVL 1 515 0 2 732 562 239 6 43 chr21 19289795 19289831 -28840064 - LTR33 LTR ERVL -121 394 360 2 732 750 269 57 5 chr21 19289933 19290127 -28839768 - LTR33 LTR ERVL -311 204 1 2 732 255 61 0 0 chr21 19290190 19290223 -28839672 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 732 192 337 99 28 chr21 19290227 19290438 -28839457 - L2c LINE L2 -81 3306 3081 2 732 736 259 15 30 chr21 19290534 19290620 -28839275 + MIRb SINE MIR 73 158 -110 2 732 1794 153 87 35 chr21 19290620 19290966 -28838929 - THE1B LTR ERVL-MaLR 0 364 1 2 732 11718 98 8 4 chr21 19290966 19292541 -28837354 - THE1B-int LTR ERVL-MaLR 0 1580 1 2 732 2420 130 5 19 chr21 19292541 19292910 -28836985 - THE1B LTR ERVL-MaLR 0 364 1 2 732 736 259 15 30 chr21 19292910 19293020 -28836875 + MIRb SINE MIR 159 268 0 2 732 283 161 65 0 chr21 19293286 19293344 -28836551 + MLT1J LTR ERVL-MaLR 106 167 -345 2 732 1209 229 15 51 chr21 19293344 19293680 -28836215 - MLT2D LTR ERVL 0 414 91 2 732 641 326 38 13 chr21 19293711 19294028 -28835867 + MLT1J2 LTR ERVL-MaLR 121 445 -3 2 732 312 346 0 22 chr21 19294028 19294164 -28835731 - L2c LINE L2 -617 2802 2670 2 732 408 257 35 7 chr21 19294376 19294517 -28835378 - LTR16D LTR ERVL -24 627 483 2 732 324 333 9 9 chr21 19294539 19294651 -28835244 - LTR16D LTR ERVL -259 392 281 2 732 287 296 11 0 chr21 19294724 19294812 -28835083 - LTR16D LTR ERVL -554 97 9 2 732 3241 105 8 11 chr21 19295076 19295549 -28834346 - MER4A1 LTR ERV1 0 472 1 2 732 253 279 9 97 chr21 19295615 19295745 -28834150 - MIR SINE MIR -64 204 81 2 732 2379 101 0 0 chr21 19295779 19296077 -28833818 - AluSx3 SINE Alu -14 298 1 2 732 314 276 126 48 chr21 19296780 19296996 -28832899 + LTR78 LTR ERV1 909 1140 -156 2 732 212 191 0 0 chr21 19297834 19297876 -28832019 + L2c LINE L2 3345 3386 -1 2 732 2471 123 19 0 chr21 19298716 19299090 -28830805 - THE1D LTR ERVL-MaLR 0 381 1 2 732 294 73 0 0 chr21 19299294 19299335 -28830560 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 732 873 190 0 0 chr21 19299359 19299538 -28830357 + (TA)n Simple_repeat Simple_repeat 2 180 0 2 732 212 175 0 0 chr21 19300125 19300165 -28829730 + L2c LINE L2 3386 3425 -1 2 732 1538 287 38 81 chr21 19301701 19302444 -28827451 + L1PB4 LINE L1 9 719 -6615 2 732 256 254 0 0 chr21 19302580 19302643 -28827252 + L1M2 LINE L1 420 482 -6367 2 732 603 274 68 100 chr21 19302829 19303109 -28826786 + L1M2 LINE L1 796 1066 -5783 2 732 1141 342 10 3 chr21 19303112 19303502 -28826393 + L1PB4 LINE L1 1627 2019 -5595 2 732 1946 230 111 2 chr21 19303513 19304070 -28825825 + L1PB4 LINE L1 1888 2505 -4813 2 732 4903 155 15 18 chr21 19304075 19305035 -28824860 + L1PB4 LINE L1 6114 7075 -249 2 732 7628 66 2 2 chr21 19305035 19306003 -28823892 - LTR5_Hs LTR ERVK 0 968 1 2 732 4903 148 16 21 chr21 19306003 19306075 -28823820 + L1PB4 LINE L1 7076 7142 -182 2 732 2274 109 7 7 chr21 19306075 19306378 -28823517 + AluSc SINE Alu 1 303 -6 2 732 4903 148 16 21 chr21 19306378 19306558 -28823337 + L1PB4 LINE L1 7143 7324 0 2 732 746 299 8 36 chr21 19307486 19307739 -28822156 - MIR SINE MIR -8 254 9 2 732 299 342 87 60 chr21 19309027 19309110 -28820785 - L2 LINE L2 -1738 1681 1598 2 732 2294 91 7 26 chr21 19309110 19309417 -28820478 + AluSx1 SINE Alu 1 301 -11 2 732 299 342 87 60 chr21 19309417 19309747 -28820148 - L2 LINE L2 -1822 1597 1257 2 732 262 291 8 100 chr21 19310137 19310277 -28819618 - L2c LINE L2 0 3426 3245 2 732 192 97 0 0 chr21 19310700 19310731 -28819164 + (TA)n Simple_repeat Simple_repeat 1 31 0 2 732 298 268 85 99 chr21 19310749 19310780 -28819115 - LTR85b LTR Gypsy? -41 743 716 2 732 2621 57 0 10 chr21 19310780 19311094 -28818801 - AluY SINE Alu 0 311 1 2 732 298 268 85 99 chr21 19311094 19311203 -28818692 - LTR85b LTR Gypsy? -69 715 605 2 732 2273 167 12 2 chr21 19311388 19311808 -28818087 - L1MB1 LINE L1 -1 6167 5744 2 732 32 57 0 0 chr21 19311829 19311882 -28818013 + AT_rich Low_complexity Low_complexity 1 53 0 2 732 946 262 93 71 chr21 19312231 19312275 -28817620 + L1ME3A LINE L1 5541 5583 -590 2 732 628 262 23 0 chr21 19312275 19312447 -28817448 + MER45A DNA hAT-Tip100 1 176 -2 2 732 946 262 93 71 chr21 19312447 19312980 -28816915 + L1ME3A LINE L1 5584 6131 -42 2 732 341 326 16 0 chr21 19313074 19313203 -28816692 + Tigger13a DNA TcMar-Tigger 3 133 -638 2 732 207 0 0 0 chr21 19313603 19313626 -28816269 + (T)n Simple_repeat Simple_repeat 1 23 0 2 732 24 32 0 0 chr21 19313944 19313975 -28815920 + AT_rich Low_complexity Low_complexity 1 31 0 2 732 1905 172 14 24 chr21 19314026 19314395 -28815500 - MLT1A0 LTR ERVL-MaLR 0 365 1 2 732 2433 131 28 0 chr21 19314539 19314891 -28815004 + THE1B LTR ERVL-MaLR 1 362 -2 2 732 881 284 14 71 chr21 19314989 19315085 -28814810 + MLT2C1 LTR ERVL 1 98 -299 2 732 2058 152 140 8 chr21 19315085 19315463 -28814432 + MSTA LTR ERVL-MaLR 1 428 0 2 732 881 284 14 71 chr21 19315463 19315787 -28814108 + MLT2C1 LTR ERVL 99 397 0 2 732 2194 296 43 18 chr21 19315833 19316573 -28813322 + L1M3b LINE L1 1216 1974 -5522 2 732 2856 279 63 24 chr21 19316667 19317245 -28812650 + L1M3b LINE L1 1832 2451 -5045 2 732 2413 77 7 7 chr21 19317245 19317542 -28812353 + AluY SINE Alu 1 297 -14 2 732 2856 285 56 25 chr21 19317542 19318348 -28811547 + L1M3b LINE L1 2430 3249 -4317 2 732 2366 51 0 14 chr21 19318452 19318728 -28811167 + AluYf4 SINE Alu 1 272 -40 2 732 449 151 47 0 chr21 19318730 19318816 -28811079 + L1M3b LINE L1 2920 3009 -4556 2 732 2076 167 73 1 chr21 19318809 19319347 -28810548 - L1M1 LINE L1 -3579 3983 3385 2 732 1649 156 9 0 chr21 19319396 19319711 -28810184 + L1M3b LINE L1 4125 4442 -3120 2 732 969 149 79 0 chr21 19319715 19319849 -28810046 + L1PREC2 LINE L1 5159 5305 -841 2 732 282 29 0 0 chr21 19319849 19319884 -28810011 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 732 969 149 79 0 chr21 19319884 19319964 -28809931 + L1PREC2 LINE L1 5306 5389 -757 2 732 3321 174 32 0 chr21 19319964 19320623 -28809272 + L1PB4 LINE L1 5475 6154 -2 2 732 3122 139 63 5 chr21 19320652 19321272 -28808623 + L1M3b LINE L1 4449 5104 -2458 2 732 204 213 0 0 chr21 19322283 19322330 -28807565 + A-rich Low_complexity Low_complexity 1 47 0 2 732 347 0 23 0 chr21 19322809 19322852 -28807043 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 732 228 308 0 0 chr21 19323336 19323414 -28806481 + (TA)n Simple_repeat Simple_repeat 2 79 0 2 732 288 0 0 0 chr21 19323424 19323456 -28806439 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 732 1575 279 81 29 chr21 19323846 19324268 -28805627 + L1MEf LINE L1 814 1265 -4977 2 732 1477 176 151 7 chr21 19324268 19324540 -28805355 + AluJo SINE Alu 1 311 -1 2 732 1575 275 82 32 chr21 19324540 19325060 -28804835 + L1MEf LINE L1 1235 1763 -4479 2 732 2019 128 61 11 chr21 19325060 19325422 -28804473 - THE1D LTR ERVL-MaLR -1 380 1 2 732 1575 275 82 32 chr21 19325422 19325636 -28804259 + L1MEf LINE L1 1764 2001 -4241 2 732 991 209 0 0 chr21 19325636 19325808 -28804087 + AluJr4 SINE Alu 136 307 -5 2 732 602 284 58 67 chr21 19325917 19326048 -28803847 + L1MEf LINE L1 2110 2241 -3905 2 732 2236 109 3 0 chr21 19326048 19326333 -28803562 + AluSg SINE Alu 3 288 -22 2 732 602 284 58 67 chr21 19326333 19326650 -28803245 + L1MEf LINE L1 2242 2554 -3592 2 732 2162 182 16 63 chr21 19326651 19327155 -28802740 + MLT2B1 LTR ERVL 1 480 -40 2 732 79 44 0 0 chr21 19327155 19327269 -28802626 + AT_rich Low_complexity Low_complexity 1 114 0 2 732 794 146 0 42 chr21 19327269 19327412 -28802483 - MLT1A0 LTR ERVL-MaLR -2 363 227 2 732 345 254 53 0 chr21 19327414 19327528 -28802367 - LTR85c LTR Gypsy? -695 128 9 2 732 2335 166 31 10 chr21 19328390 19328803 -28801092 + MSTB LTR ERVL-MaLR 1 422 -4 2 732 1555 166 11 11 chr21 19328833 19329114 -28800781 - MLT1A0 LTR ERVL-MaLR -2 363 83 2 732 1051 154 27 0 chr21 19329160 19329348 -28800547 + MLT2B1 LTR ERVL 1 193 -327 2 732 363 102 34 0 chr21 19329353 19329412 -28800483 - MLT1A0 LTR ERVL-MaLR -273 92 32 2 732 268 375 160 29 chr21 19329428 19329810 -28800085 + L2 LINE L2 2561 2992 -427 2 732 182 0 64 85 chr21 19330025 19330072 -28799823 + (TAAAAA)n Simple_repeat Simple_repeat 6 51 0 2 732 628 300 54 44 chr21 19330368 19330773 -28799122 - Plat_L3 LINE CR1 -190 3396 2988 2 732 276 279 25 12 chr21 19332420 19332500 -28797395 - MamRep38 DNA hAT -132 163 83 2 732 21 0 0 0 chr21 19332603 19332624 -28797271 + AT_rich Low_complexity Low_complexity 1 21 0 2 732 272 331 115 43 chr21 19332802 19333247 -28796648 + L2a LINE L2 2037 2513 -906 2 732 301 269 11 124 chr21 19333357 19333446 -28796449 + L2a LINE L2 3304 3421 -5 2 732 2472 68 0 3 chr21 19335098 19335390 -28794505 + AluY SINE Alu 1 291 -20 2 732 207 0 0 0 chr21 19335390 19335413 -28794482 + (TAA)n Simple_repeat Simple_repeat 2 24 0 2 732 2298 144 11 3 chr21 19335653 19336014 -28793881 - THE1B LTR ERVL-MaLR 0 364 1 2 732 220 273 0 0 chr21 19336640 19336695 -28793200 + (CA)n Simple_repeat Simple_repeat 1 55 0 2 732 22 35 0 0 chr21 19337356 19337385 -28792510 + AT_rich Low_complexity Low_complexity 1 29 0 2 732 339 337 92 41 chr21 19337733 19338096 -28791799 + L2c LINE L2 3021 3375 0 2 732 22 0 0 0 chr21 19338225 19338247 -28791648 + AT_rich Low_complexity Low_complexity 1 22 0 2 732 26 30 0 0 chr21 19338342 19338375 -28791520 + AT_rich Low_complexity Low_complexity 1 33 0 2 732 2161 116 10 0 chr21 19339208 19339500 -28790395 - AluSx1 SINE Alu -17 295 1 2 732 185 298 0 0 chr21 19340125 19340172 -28789723 - L2a LINE L2 -8 3418 3372 2 732 199 361 0 0 chr21 19340967 19341028 -28788867 + L2c LINE L2 3359 3419 -7 2 732 321 294 19 38 chr21 19342250 19342356 -28787539 + LTR79 LTR ERVL 45 148 -379 2 732 268 337 35 23 chr21 19342546 19342719 -28787176 + LTR79 LTR ERVL 353 527 0 2 732 940 92 0 0 chr21 19342917 19343048 -28786847 - L1PB1 LINE L1 0 6151 6021 2 732 6993 58 5 0 chr21 19343056 19343949 -28785946 - L1PA7 LINE L1 -3 6151 5255 2 732 12608 86 12 5 chr21 19343947 19345704 -28784191 + L1PA7 LINE L1 3467 5237 -909 2 732 2447 80 6 16 chr21 19345722 19346034 -28783861 - AluY SINE Alu 0 311 3 2 732 2058 139 4 0 chr21 19346579 19346886 -28783009 - AluSg SINE Alu 0 310 1 2 732 246 119 75 0 chr21 19347236 19347303 -28782592 + (TA)n Simple_repeat Simple_repeat 1 72 0 2 732 784 125 0 0 chr21 19347362 19347466 -28782429 + AluSg SINE Alu 1 104 -206 2 732 1883 123 99 10 chr21 19347466 19347779 -28782116 + L1PA15 LINE L1 5825 6165 0 2 732 272 365 38 69 chr21 19347787 19348076 -28781819 + L2a LINE L2 2888 3167 -259 2 732 1363 158 10 0 chr21 19348406 19348615 -28781280 + AluSg SINE Alu 100 310 0 2 732 211 239 22 0 chr21 19348721 19348767 -28781128 + L4 LINE RTE 1806 1852 -177 2 732 22 70 0 0 chr21 19349015 19349058 -28780837 + AT_rich Low_complexity Low_complexity 1 43 0 2 732 343 298 41 8 chr21 19349402 19349524 -28780371 - MIR SINE MIR -40 222 97 2 732 2275 83 20 20 chr21 19349675 19349976 -28779919 - AluSc SINE Alu -8 301 1 2 732 1996 92 0 11 chr21 19349997 19350257 -28779638 + AluSc SINE Alu 45 301 -8 2 732 2378 230 36 43 chr21 19350306 19350458 -28779437 - MLT1E2 LTR ERVL-MaLR 0 627 480 2 732 2346 98 0 0 chr21 19350458 19350753 -28779142 + AluSg SINE Alu 1 295 -15 2 732 2586 71 3 0 chr21 19350753 19351063 -28778832 + AluY SINE Alu 1 311 0 2 732 2378 230 36 43 chr21 19351063 19351540 -28778355 - MLT1E2 LTR ERVL-MaLR -148 479 1 2 732 410 284 245 31 chr21 19353198 19353394 -28776501 + MIRb SINE MIR 23 260 -8 2 732 22 0 0 0 chr21 19353708 19353730 -28776165 + AT_rich Low_complexity Low_complexity 1 22 0 2 732 2132 96 0 65 chr21 19355010 19355333 -28774562 - AluSz SINE Alu -2 310 9 2 732 518 331 61 22 chr21 19355442 19356063 -28773832 - L1ME4a LINE L1 -206 5918 5274 2 732 3207 189 87 35 chr21 19356055 19356790 -28773105 - L1MA10 LINE L1 -9 6325 5553 2 732 506 292 11 11 chr21 19357386 19357566 -28772329 - L1MC LINE L1 -1521 4625 4446 2 732 1655 187 114 3 chr21 19358102 19358418 -28771477 - MLT1A0 LTR ERVL-MaLR -11 354 4 2 732 200 213 0 0 chr21 19358446 19358493 -28771402 + T-rich Low_complexity Low_complexity 1 47 0 2 732 4808 73 3 0 chr21 19358493 19359123 -28770772 - L1PA7 LINE L1 -11 6143 5512 2 732 241 226 89 73 chr21 19359396 19359520 -28770375 + L3 LINE CR1 3737 3862 -627 2 732 5249 22 0 0 chr21 19360714 19361315 -28768580 - L1PA3 LINE L1 0 6155 5555 2 732 180 346 117 36 chr21 19361591 19361702 -28768193 + MIR3 SINE MIR 84 203 -5 2 732 35 24 0 0 chr21 19362486 19362528 -28767367 + AT_rich Low_complexity Low_complexity 1 42 0 2 732 243 231 12 37 chr21 19362530 19362611 -28767284 + (TCTCTG)n Simple_repeat Simple_repeat 4 82 0 2 732 6229 152 21 113 chr21 19362994 19365076 -28764819 - L1MA4 LINE L1 0 6300 4234 2 732 1434 114 10 0 chr21 19365076 19365269 -28764626 - AluSp SINE Alu -118 195 1 2 732 6229 152 21 113 chr21 19365269 19365526 -28764369 - L1MA4 LINE L1 0 4233 3977 2 732 4381 116 3 3 chr21 19365526 19366184 -28763711 - L1PA13 LINE L1 -1 6162 5505 2 732 6229 169 18 19 chr21 19366184 19366532 -28763363 - L1MA4 LINE L1 -2167 3976 3958 2 732 3438 264 211 9 chr21 19366531 19367909 -28761986 - L1M2b LINE L1 -5551 1658 2 2 732 212 240 39 26 chr21 19368688 19368765 -28761130 + L2c LINE L2 3263 3340 -47 2 732 340 346 68 31 chr21 19369001 19369162 -28760733 + L3 LINE CR1 4266 4432 -57 2 732 391 258 41 24 chr21 19369354 19369477 -28760418 - LTR78 LTR ERV1 0 1304 1180 2 732 518 308 134 72 chr21 19369502 19369839 -28760056 - LTR78 LTR ERV1 -201 1103 740 2 732 2510 110 0 30 chr21 19369839 19370203 -28759692 - THE1A LTR ERVL-MaLR 0 355 3 2 732 11620 96 5 0 chr21 19370205 19371777 -28758118 - THE1A-int LTR ERVL-MaLR 0 1580 1 2 732 2502 110 3 3 chr21 19371777 19372132 -28757763 - THE1A LTR ERVL-MaLR 0 355 1 2 732 518 308 134 72 chr21 19372132 19372178 -28757717 - LTR78 LTR ERV1 -565 739 692 2 732 290 311 81 81 chr21 19372320 19372530 -28757365 - LTR78 LTR ERV1 -1072 232 23 2 732 207 0 0 0 chr21 19374090 19374113 -28755782 + (T)n Simple_repeat Simple_repeat 1 23 0 2 732 245 392 59 32 chr21 19374516 19374703 -28755192 + L4 LINE RTE 392 583 -1446 2 732 347 314 7 82 chr21 19374787 19374922 -28754973 - LSU-rRNA_Hsa rRNA rRNA -3 5032 4908 2 732 2833 23 0 0 chr21 19375158 19375463 -28754432 + AluYf4 SINE Alu 1 305 -7 2 732 63 26 0 0 chr21 19375683 19375760 -28754135 + AT_rich Low_complexity Low_complexity 1 77 0 2 732 288 244 25 25 chr21 19375760 19375840 -28754055 - MIR SINE MIR 0 262 183 2 732 2297 157 53 0 chr21 19376020 19376396 -28753499 - LTR64 LTR ERV1 -27 501 106 2 732 268 330 50 25 chr21 19377020 19377141 -28752754 + MIRb SINE MIR 77 200 -68 2 732 313 307 78 124 chr21 19377278 19377520 -28752375 - MIRb SINE MIR -26 242 12 2 732 887 261 20 24 chr21 19377437 19377684 -28752211 + MIR SINE MIR 6 251 -11 2 732 1196 104 106 28 chr21 19378089 19378194 -28751701 + L1PA10 LINE L1 5934 6047 -121 2 732 2077 141 8 42 chr21 19378194 19378571 -28751324 + THE1B LTR ERVL-MaLR 1 364 0 2 732 1196 104 106 28 chr21 19378571 19378683 -28751212 + L1PA10 LINE L1 6048 6168 0 2 732 225 328 83 8 chr21 19378990 19379110 -28750785 - L3b LINE CR1 -78 4430 4302 2 732 2399 167 62 58 chr21 19380463 19380625 -28749270 - L1MA10 LINE L1 0 6334 6180 2 732 210 37 0 0 chr21 19380625 19380652 -28749243 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 732 2399 167 62 58 chr21 19380652 19381022 -28748873 - L1MA10 LINE L1 -155 6179 5800 2 732 25 51 0 0 chr21 19381780 19381819 -28748076 + AT_rich Low_complexity Low_complexity 1 39 0 2 732 2155 70 0 0 chr21 19381961 19382217 -28747678 + AluY SINE Alu 39 294 -17 2 732 1800 35 8 97 chr21 19382385 19382642 -28747253 + AluY SINE Alu 76 309 -2 2 732 310 151 75 0 chr21 19384262 19384315 -28745580 - L2a LINE L2 -5 3421 3365 2 732 228 369 16 39 chr21 19384856 19384983 -28744912 - MIR3 SINE MIR -71 137 14 2 732 30 45 0 0 chr21 19385390 19385434 -28744461 + AT_rich Low_complexity Low_complexity 1 44 0 2 732 783 231 18 0 chr21 19385442 19385611 -28744284 + LTR16C LTR ERVL 318 489 0 2 732 2474 87 0 0 chr21 19385952 19386250 -28743645 - AluSx SINE Alu -13 299 2 2 732 1859 121 3 14 chr21 19386520 19386805 -28743090 + L1PA16 LINE L1 5719 6000 -166 2 732 2164 196 49 0 chr21 19386805 19387213 -28742682 + MSTA LTR ERVL-MaLR 1 428 0 2 732 1308 158 18 0 chr21 19387213 19387435 -28742460 + MSTA-int LTR ERVL-MaLR 1 226 -1425 2 732 2168 145 123 8 chr21 19387435 19387818 -28742077 + MSTA LTR ERVL-MaLR 1 427 -1 2 732 8708 150 7 83 chr21 19387822 19389527 -28740368 + MSTA-int LTR ERVL-MaLR 4 1579 -1 2 732 1120 134 162 17 chr21 19389528 19389763 -28740132 + MSTA LTR ERVL-MaLR 1 269 -159 2 732 4724 195 16 15 chr21 19389739 19390620 -28739275 + MSTA-int LTR ERVL-MaLR 770 1651 0 2 732 2375 182 44 0 chr21 19390622 19391029 -28738866 + MSTA LTR ERVL-MaLR 3 427 -1 2 732 341 102 0 0 chr21 19391061 19391110 -28738785 - MADE1 DNA TcMar-Mariner -30 50 2 2 732 231 179 0 0 chr21 19391114 19391153 -28738742 + L1PA17 LINE L1 6118 6156 -10 2 732 347 365 73 5 chr21 19391286 19391490 -28738405 + MIR SINE MIR 44 261 -1 2 732 1607 129 44 7 chr21 19391646 19391943 -28737952 + L1MA3 LINE L1 5998 6305 0 2 732 21 57 0 0 chr21 19391968 19392003 -28737892 + AT_rich Low_complexity Low_complexity 1 35 0 2 732 471 338 90 17 chr21 19392024 19392313 -28737582 - MLT1I LTR ERVL-MaLR -28 383 74 2 732 608 199 103 32 chr21 19392977 19393133 -28736762 + MLT1B LTR ERVL-MaLR 1 167 -223 2 732 799 145 8 8 chr21 19393139 19393256 -28736639 + AluJo SINE Alu 1 117 -195 2 732 534 316 84 4 chr21 19393401 19393627 -28736268 - L2 LINE L2 -1061 2358 2115 2 732 709 212 0 87 chr21 19394189 19394385 -28735510 + MLT1A LTR ERVL-MaLR 1 179 -195 2 732 1018 289 127 22 chr21 19394398 19394855 -28735040 - MLT1D LTR ERVL-MaLR 0 505 1 2 732 440 255 42 117 chr21 19397869 19397947 -28731948 + L2a LINE L2 3230 3288 -138 2 732 2043 158 8 33 chr21 19397947 19398345 -28731550 - MLT1B LTR ERVL-MaLR -2 388 1 2 732 440 255 42 117 chr21 19398345 19398479 -28731416 + L2a LINE L2 3289 3426 0 2 733 1716 196 14 3 chr21 19399312 19399597 -28730298 + AluJr SINE Alu 1 288 -24 2 733 1613 217 14 27 chr21 19399994 19400364 -28729531 + MLT1A0 LTR ERVL-MaLR 1 365 0 2 733 272 27 0 26 chr21 19400526 19400564 -28729331 + (TCCCC)n Simple_repeat Simple_repeat 1 37 0 2 733 288 313 106 66 chr21 19400587 19400732 -28729163 + L2b LINE L2 3184 3340 -86 2 733 2422 97 0 6 chr21 19400732 19401043 -28728852 + AluSq SINE Alu 1 309 -4 2 733 288 365 9 78 chr21 19401043 19401123 -28728772 + L2b LINE L2 3290 3367 -8 2 733 321 283 0 78 chr21 19402294 19402335 -28727560 + MLT1N2 LTR ERVL-MaLR 443 477 -85 2 733 1875 250 50 45 chr21 19402335 19402889 -28727006 + MLT1F2 LTR ERVL-MaLR 1 557 -3 2 733 321 283 0 78 chr21 19402889 19402962 -28726933 + MLT1N2 LTR ERVL-MaLR 478 548 -14 2 733 205 221 139 56 chr21 19403209 19403281 -28726614 + L3 LINE CR1 3285 3362 -1127 2 733 360 331 71 7 chr21 19403636 19403776 -28726119 + ERVL-E-int LTR ERVL 1041 1189 -4478 2 733 328 247 102 10 chr21 19404275 19404373 -28725522 + ERVL-E-int LTR ERVL 1876 1982 -3685 2 733 1364 158 35 7 chr21 19404384 19404670 -28725225 + L1MA8 LINE L1 5993 6286 -5 2 733 793 276 54 28 chr21 19404737 19405012 -28724883 + ERVL-E-int LTR ERVL 2202 2483 -3184 2 733 718 325 167 7 chr21 19405191 19405735 -28724160 - L2a LINE L2 0 3426 2795 2 733 352 324 19 0 chr21 19406042 19406147 -28723748 + LTR88c LTR Gypsy? 67 173 -689 2 733 416 303 42 11 chr21 19406167 19406357 -28723538 + L1M6 LINE L1 2 197 -6299 2 733 343 239 143 23 chr21 19406535 19406668 -28723227 + LTR83 LTR ERVL 229 377 -403 2 733 516 301 116 0 chr21 19407247 19407420 -28722475 + LTR83 LTR ERVL 383 575 -205 2 733 4902 223 91 21 chr21 19407433 19408981 -28720914 - L1MEc LINE L1 -4516 2102 326 2 733 794 327 140 23 chr21 19409348 19410055 -28719840 + L1M6 LINE L1 548 1337 -5159 2 733 609 154 69 0 chr21 19410213 19410343 -28719552 - L1MEc LINE L1 -4847 1553 1415 2 733 566 296 38 22 chr21 19410448 19410631 -28719264 + L1M6 LINE L1 1616 1801 -4695 2 733 27 49 0 0 chr21 19412099 19412140 -28717755 + AT_rich Low_complexity Low_complexity 1 41 0 2 733 446 311 39 11 chr21 19413548 19413730 -28716165 + MIRb SINE MIR 26 212 -56 2 733 22 0 0 0 chr21 19414275 19414297 -28715598 + AT_rich Low_complexity Low_complexity 1 22 0 2 733 28 0 0 0 chr21 19414484 19414512 -28715383 + AT_rich Low_complexity Low_complexity 1 28 0 2 733 536 339 5 11 chr21 19414739 19414924 -28714971 - MIR3 SINE MIR -5 203 20 2 733 303 337 29 17 chr21 19415335 19415510 -28714385 - MamRep605 Unknown Unknown -344 532 356 2 733 4471 201 70 22 chr21 19415514 19416034 -28713861 + MER45B DNA hAT-Tip100 1 553 -487 2 733 1954 110 80 40 chr21 19416034 19416384 -28713511 - THE1B LTR ERVL-MaLR 0 364 1 2 733 4471 201 70 22 chr21 19416384 19416856 -28713039 + MER45B DNA hAT-Tip100 554 1040 0 2 733 680 292 120 36 chr21 19417172 19417531 -28712364 - L2a LINE L2 0 3426 3038 2 733 1058 258 82 53 chr21 19417551 19417955 -28711940 + MLT1C LTR ERVL-MaLR 1 418 -49 2 733 2137 179 30 12 chr21 19417955 19418356 -28711539 + MLT1A1 LTR ERVL-MaLR 1 408 0 2 733 1058 258 82 53 chr21 19418356 19418405 -28711490 + MLT1C LTR ERVL-MaLR 419 467 0 2 733 558 351 118 52 chr21 19418405 19418988 -28710907 - L2a LINE L2 -398 3021 2400 2 733 182 350 49 20 chr21 19419430 19419532 -28710363 + L3 LINE CR1 908 1012 -3477 2 733 23 0 0 0 chr21 19419732 19419755 -28710140 + AT_rich Low_complexity Low_complexity 1 23 0 2 733 2155 159 18 25 chr21 19421812 19422205 -28707690 - MLT1B LTR ERVL-MaLR 0 390 1 2 733 679 343 87 54 chr21 19422230 19423176 -28706719 - L2b LINE L2 -18 3408 2343 2 733 3513 40 0 2 chr21 19423246 19423677 -28706218 - L1PA7 LINE L1 0 6154 5725 2 733 21 0 0 0 chr21 19423721 19423742 -28706153 + AT_rich Low_complexity Low_complexity 1 21 0 2 733 412 296 77 26 chr21 19424593 19424749 -28705146 - MIR3 SINE MIR -30 178 15 2 733 277 338 154 13 chr21 19425476 19425632 -28704263 - AmnSINE1 SINE Deu -147 428 251 2 733 325 186 20 60 chr21 19426172 19426321 -28703574 + (TA)n Simple_repeat Simple_repeat 2 144 0 2 733 270 257 0 0 chr21 19426452 19426522 -28703373 + (TA)n Simple_repeat Simple_repeat 1 70 0 2 733 1495 162 187 11 chr21 19426718 19427157 -28702738 + L1MA7 LINE L1 5776 6291 0 2 733 225 410 22 17 chr21 19427219 19427400 -28702495 + L2a LINE L2 975 1156 -2263 2 733 244 238 268 39 chr21 19427565 19427718 -28702177 - L1ME3D LINE L1 -69 6173 5986 2 733 308 303 36 36 chr21 19428234 19428371 -28701524 - HAL1 LINE L1 -600 1907 1771 2 733 646 258 11 0 chr21 19428392 19428578 -28701317 - HAL1 LINE L1 -810 1697 1510 2 733 40 79 0 0 chr21 19428617 19428706 -28701189 + AT_rich Low_complexity Low_complexity 1 89 0 2 733 1104 265 132 40 chr21 19428706 19429531 -28700364 - HAL1 LINE L1 -1050 1457 557 2 733 1703 166 25 19 chr21 19429654 19429974 -28699921 - L1MC1 LINE L1 -8 6325 6004 2 733 1626 159 7 3 chr21 19430159 19430462 -28699433 - L1MA5 LINE L1 -10 6290 5987 2 733 3251 97 38 8 chr21 19430462 19430962 -28698933 + L1MA5 LINE L1 5435 5949 -351 2 733 295 351 144 24 chr21 19430968 19431309 -28698586 + L2a LINE L2 1980 2361 -1058 2 733 1257 251 35 61 chr21 19431309 19431704 -28698191 + MLT1B LTR ERVL-MaLR 1 385 -5 2 733 1369 86 109 5 chr21 19431816 19432037 -28697858 - L1PA11 LINE L1 0 6174 5931 2 733 542 121 0 0 chr21 19432039 19432122 -28697773 + L1PA11 LINE L1 5867 5949 -219 2 733 467 348 61 35 chr21 19432163 19432491 -28697404 + L2a LINE L2 2482 2824 -595 2 733 1983 145 18 0 chr21 19432491 19432794 -28697101 + AluJb SINE Alu 2 312 0 2 733 467 348 61 35 chr21 19432794 19432809 -28697086 + L2a LINE L2 2825 2835 -584 2 733 1282 174 0 69 chr21 19434583 19434805 -28695090 - AluSx SINE Alu -70 242 34 2 733 2281 100 0 0 chr21 19434805 19435095 -28694800 + AluSz SINE Alu 5 294 -18 2 733 1282 174 0 69 chr21 19435095 19435132 -28694763 - AluSx SINE Alu -279 33 1 2 733 204 206 0 0 chr21 19435193 19435227 -28694668 + polypurine Low_complexity Low_complexity 2 35 0 2 733 212 262 0 45 chr21 19436155 19436243 -28693652 + CT-rich Low_complexity Low_complexity 1 84 0 2 733 281 287 29 41 chr21 19436581 19436717 -28693178 + L2a LINE L2 3236 3425 -1 2 733 1238 188 86 4 chr21 19436799 19437066 -28692829 + MLT2B4 LTR ERVL 214 502 -54 2 733 261 154 58 0 chr21 19437125 19437177 -28692718 + MLT2B4 LTR ERVL 502 556 0 2 733 211 313 36 108 chr21 19437585 19437696 -28692199 + L2a LINE L2 3285 3426 0 2 733 2055 158 10 70 chr21 19438957 19439372 -28690523 + MLT1B LTR ERVL-MaLR 1 390 0 2 733 2166 190 34 43 chr21 19439532 19440000 -28689895 + MLT1C LTR ERVL-MaLR 3 466 -1 2 733 23 0 0 0 chr21 19440379 19440402 -28689493 + AT_rich Low_complexity Low_complexity 1 23 0 2 733 2389 108 0 0 chr21 19440507 19440814 -28689081 - AluSq SINE Alu -6 307 1 2 733 790 251 145 4 chr21 19441144 19441392 -28688503 - LTR40b LTR ERVL -2 460 178 2 733 209 83 28 0 chr21 19441839 19441875 -28688020 + (TA)n Simple_repeat Simple_repeat 2 38 0 2 733 939 149 0 0 chr21 19442093 19442227 -28687668 - AluJr4 SINE Alu -178 134 1 2 733 206 200 0 0 chr21 19442234 19442269 -28687626 + C-rich Low_complexity Low_complexity 2 36 0 2 733 518 108 12 0 chr21 19442269 19442352 -28687543 + (TTCCC)n Simple_repeat Simple_repeat 1 84 0 2 733 232 204 19 0 chr21 19442358 19442412 -28687483 + T-rich Low_complexity Low_complexity 5 59 0 2 733 801 83 58 0 chr21 19442431 19442551 -28687344 + L1PB1 LINE L1 6022 6148 -3 2 733 789 221 136 0 chr21 19442823 19443036 -28686859 - LTR40a LTR ERVL -275 244 3 2 733 2187 131 3 0 chr21 19443464 19443762 -28686133 - AluSg SINE Alu -11 299 1 2 733 201 66 0 90 chr21 19444020 19444087 -28685808 + (CATTT)n Simple_repeat Simple_repeat 1 61 0 2 733 29 60 0 0 chr21 19446203 19446253 -28683642 + AT_rich Low_complexity Low_complexity 1 50 0 2 733 519 287 13 7 chr21 19447765 19447916 -28681979 + MIRb SINE MIR 37 188 -80 2 733 1684 247 3 6 chr21 19448060 19448426 -28681469 + MLT1A0 LTR ERVL-MaLR 1 365 0 2 733 2569 183 90 19 chr21 19448432 19449071 -28680824 + MLT1A0-int LTR ERVL-MaLR 6 770 -965 2 733 2218 235 18 125 chr21 19449070 19449800 -28680095 + MLT1A0-int LTR ERVL-MaLR 1083 1734 -1 2 733 1971 172 28 31 chr21 19449802 19450162 -28679733 + MLT1A0 LTR ERVL-MaLR 2 360 -5 2 733 455 272 43 35 chr21 19450297 19450438 -28679457 + MIR SINE MIR 2 143 -119 2 733 2617 96 3 35 chr21 19450438 19450814 -28679081 - THE1B LTR ERVL-MaLR 0 364 1 2 733 604 311 67 5 chr21 19451065 19451293 -28678602 - MIRb SINE MIR -18 250 2 2 733 1908 173 27 16 chr21 19451296 19451672 -28678223 - L1PB4 LINE L1 0 6156 5777 2 733 188 107 50 59 chr21 19451678 19451797 -28678098 + (TA)n Simple_repeat Simple_repeat 1 118 0 2 733 253 173 46 46 chr21 19451812 19451921 -28677974 + (TA)n Simple_repeat Simple_repeat 1 109 0 2 733 717 179 4 9 chr21 19451925 19452065 -28677830 - L1P4 LINE L1 -348 5806 5664 2 733 303 247 0 0 chr21 19452046 19452119 -28677776 + L1P4 LINE L1 5664 5736 -432 2 733 8090 174 9 14 chr21 19452163 19453716 -28676179 - L1P4 LINE L1 -512 5644 4104 2 733 2376 109 0 0 chr21 19453716 19454019 -28675876 + AluSq2 SINE Alu 1 303 -9 2 733 8090 186 9 17 chr21 19454019 19454335 -28675560 - L1P4 LINE L1 -2043 4103 3789 2 733 1801 172 130 16 chr21 19454335 19454719 -28675176 + MSTA LTR ERVL-MaLR 1 428 0 2 733 9232 146 27 36 chr21 19454721 19456302 -28673593 + MSTA-int LTR ERVL-MaLR 3 1569 -11 2 733 1237 192 100 25 chr21 19456303 19456622 -28673273 + MSTA LTR ERVL-MaLR 3 325 -56 2 733 4380 193 40 12 chr21 19456629 19457238 -28672657 - L1M2a1 LINE L1 -3037 4075 3462 2 733 369 0 0 0 chr21 19457238 19457279 -28672616 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 733 9679 194 35 41 chr21 19457279 19460110 -28669785 - L1M2a1 LINE L1 -3651 3461 650 2 733 1910 142 144 21 chr21 19460110 19460491 -28669404 - MSTA LTR ERVL-MaLR 0 428 1 2 733 9679 156 38 76 chr21 19460491 19461115 -28668780 - L1M2a1 LINE L1 -6467 649 1 2 733 23 54 0 0 chr21 19461612 19461649 -28668246 + AT_rich Low_complexity Low_complexity 1 37 0 2 733 259 308 82 41 chr21 19461972 19462094 -28667801 + HAL1 LINE L1 4 130 -2377 2 733 407 328 55 28 chr21 19462706 19463063 -28666832 + HAL1 LINE L1 841 1263 -1244 2 733 19133 161 59 20 chr21 19463095 19467161 -28662734 + L1MA2 LINE L1 17 4552 -3013 2 733 2153 150 0 0 chr21 19467161 19467467 -28662428 + AluSx SINE Alu 3 308 -4 2 733 19133 121 21 6 chr21 19467467 19468285 -28661610 + L1MA2 LINE L1 4553 5372 -2193 2 733 5458 124 205 13 chr21 19468285 19469347 -28660548 + MER11A LTR ERVK 1 1266 0 2 733 19133 122 16 13 chr21 19469347 19471705 -28658190 + L1MA2 LINE L1 5373 7723 0 2 733 34 24 0 0 chr21 19471706 19471747 -28658148 + AT_rich Low_complexity Low_complexity 1 41 0 2 733 445 321 103 12 chr21 19471785 19472214 -28657681 + HAL1 LINE L1 1343 1810 -697 2 733 306 255 62 101 chr21 19472285 19472494 -28657401 + HAL1 LINE L1 1948 2148 -359 2 733 269 301 131 35 chr21 19472713 19473026 -28656869 + HAL1 LINE L1 2165 2507 0 2 733 221 353 0 0 chr21 19473207 19473289 -28656606 + MIRc SINE MIR 81 159 -49 2 733 2196 124 22 27 chr21 19473324 19473690 -28656205 + THE1B LTR ERVL-MaLR 1 364 0 2 733 213 271 167 36 chr21 19475428 19475566 -28654329 + MIRb SINE MIR 105 260 -8 2 733 1571 316 43 0 chr21 19475751 19476239 -28653656 - MLT1H1 LTR ERVL-MaLR -2 553 45 2 733 327 278 127 18 chr21 19476251 19476361 -28653534 + MIRb SINE MIR 118 239 -29 2 733 1936 128 79 25 chr21 19476503 19476857 -28653038 + THE1C LTR ERVL-MaLR 1 373 -2 2 733 607 323 86 80 chr21 19477285 19477823 -28652072 + MLT1N2 LTR ERVL-MaLR 14 554 -8 2 733 410 267 39 20 chr21 19477883 19478036 -28651859 + MER5B DNA hAT-Charlie 1 156 -22 2 733 2142 337 72 46 chr21 19478047 19478801 -28651094 + ERVL-E-int LTR ERVL 1147 1889 -3778 2 733 2425 97 3 3 chr21 19478801 19479112 -28650783 - AluY SINE Alu 0 311 1 2 733 2142 337 72 46 chr21 19479112 19479713 -28650182 + ERVL-E-int LTR ERVL 1890 2537 -3130 2 733 348 293 59 13 chr21 19479934 19480086 -28649809 + ERVL-E-int LTR ERVL 3624 3782 -1885 2 733 386 314 57 0 chr21 19480302 19480442 -28649453 + ERVL-E-int LTR ERVL 4289 4436 -1231 2 733 334 291 97 9 chr21 19480507 19480724 -28649171 + ERVL-E-int LTR ERVL 4535 4843 -871 2 733 315 0 0 0 chr21 19481155 19481190 -28648705 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 733 21 0 0 0 chr21 19482009 19482030 -28647865 + AT_rich Low_complexity Low_complexity 1 21 0 2 733 609 280 95 65 chr21 19482612 19482918 -28646977 + MLT1G1 LTR ERVL-MaLR 67 381 -198 2 733 399 322 38 99 chr21 19483082 19483344 -28646551 - LTR88b LTR Gypsy? -581 256 11 2 733 344 304 92 52 chr21 19484307 19484557 -28645338 - L2c LINE L2 0 3387 3128 2 733 7104 88 9 5 chr21 19484557 19485699 -28644196 + L1MA1 LINE L1 4467 5620 -682 2 733 2035 135 147 26 chr21 19485699 19486080 -28643815 - MSTA LTR ERVL-MaLR 0 428 2 2 733 7104 88 30 8 chr21 19486080 19486752 -28643143 + L1MA1 LINE L1 5621 6302 0 2 733 1993 102 69 7 chr21 19486778 19487052 -28642843 - AluSq2 SINE Alu -20 292 2 2 733 536 272 141 55 chr21 19487181 19487401 -28642494 + MLT1G1 LTR ERVL-MaLR 338 574 -5 2 733 263 376 73 36 chr21 19487898 19488199 -28641696 + L2 LINE L2 282 593 -2826 2 733 443 256 197 16 chr21 19489500 19489683 -28640212 - Charlie17a DNA hAT-Charlie -3 216 1 2 733 288 261 34 0 chr21 19489892 19489980 -28639915 - L2a LINE L2 -63 3363 3273 2 733 248 36 0 97 chr21 19489997 19490059 -28639836 + (TAAA)n Simple_repeat Simple_repeat 1 56 0 2 733 815 279 130 19 chr21 19490059 19490483 -28639412 + Tigger13a DNA TcMar-Tigger 265 735 -36 2 733 205 313 11 67 chr21 19490514 19490603 -28639292 - L2a LINE L2 -1 3425 3342 2 733 209 125 25 0 chr21 19491179 19491219 -28638676 - MIRc SINE MIR -32 236 196 2 733 581 312 32 5 chr21 19491376 19491592 -28638303 - L1ME1 LINE L1 -2 6177 5956 2 733 340 299 194 0 chr21 19492084 19492218 -28637677 - MIR3 SINE MIR -6 202 43 2 733 203 290 14 0 chr21 19492935 19493004 -28636891 + (TA)n Simple_repeat Simple_repeat 2 71 0 2 733 730 304 126 28 chr21 19493363 19493507 -28636388 + L2 LINE L2 2164 2342 -1077 2 733 1346 94 133 0 chr21 19493507 19493710 -28636185 - MER30 DNA hAT-Charlie 0 230 1 2 733 730 304 126 28 chr21 19493710 19493955 -28635940 + L2 LINE L2 2343 2590 -829 2 733 202 351 47 8 chr21 19494054 19494183 -28635712 + L2 LINE L2 2820 2953 -466 2 733 1515 179 20 40 chr21 19495526 19495735 -28634160 + LTR53 LTR ERVL 1 208 -311 2 733 1273 221 72 61 chr21 19495735 19496126 -28633769 - MSTD LTR ERVL-MaLR 0 396 2 2 733 1515 179 20 40 chr21 19496126 19496218 -28633677 + LTR53 LTR ERVL 209 296 -223 2 733 1475 72 6 6 chr21 19496220 19496400 -28633495 + AluSx1 SINE Alu 3 182 -130 2 733 1005 246 67 0 chr21 19496410 19496634 -28633261 + LTR53 LTR ERVL 281 519 0 2 733 358 320 137 57 chr21 19497092 19497304 -28632591 - MIRb SINE MIR 0 268 40 2 733 208 394 13 72 chr21 19497397 19497550 -28632345 + MIRb SINE MIR 71 214 -54 2 733 294 294 43 11 chr21 19497594 19497687 -28632208 - L2a LINE L2 -2 3424 3329 2 733 230 343 21 7 chr21 19497688 19497829 -28632066 + L1M5 LINE L1 4952 5094 -1052 2 733 237 24 0 67 chr21 19497883 19497928 -28631967 + (TTAA)n Simple_repeat Simple_repeat 3 44 0 2 733 1092 109 0 0 chr21 19497928 19498066 -28631829 - AluSx SINE Alu -27 285 148 2 733 2258 154 9 211 chr21 19498160 19498352 -28631543 + Tigger1 DNA TcMar-Tigger 1900 2088 -330 2 733 650 206 79 16 chr21 19498352 19498478 -28631417 + AluJo SINE Alu 156 289 -23 2 733 2258 154 9 211 chr21 19498478 19498809 -28631086 + Tigger1 DNA TcMar-Tigger 2089 2417 -1 2 733 682 133 0 55 chr21 19498811 19498938 -28630957 - L1M2 LINE L1 -1542 4601 4482 2 733 535 208 25 103 chr21 19499459 19499663 -28630232 + L1MB7 LINE L1 5989 6176 -8 2 733 476 290 5 75 chr21 19499666 19499867 -28630028 + L1MC5 LINE L1 6727 6913 -1048 2 733 631 246 15 0 chr21 19500019 19500149 -28629746 - MLT1E1 LTR ERVL-MaLR -47 607 476 2 733 810 193 63 113 chr21 19500174 19500335 -28629560 + L1M4c LINE L1 1845 2006 -5002 2 733 2528 65 13 3 chr21 19500335 19500643 -28629252 + AluY SINE Alu 1 311 0 2 733 798 193 71 130 chr21 19500643 19500825 -28629070 + L1M4c LINE L1 2005 2157 -5177 2 733 27 49 0 0 chr21 19501361 19501402 -28628493 + AT_rich Low_complexity Low_complexity 1 41 0 2 733 414 39 0 0 chr21 19502209 19502261 -28627634 + (TG)n Simple_repeat Simple_repeat 1 52 0 2 733 591 277 25 0 chr21 19502481 19502640 -28627255 + MIR SINE MIR 100 262 0 2 733 942 177 82 215 chr21 19503228 19503652 -28626243 - MLT1A LTR ERVL-MaLR -2 372 5 2 733 280 378 9 9 chr21 19504016 19504128 -28625767 + L2 LINE L2 2693 2804 -615 2 733 617 81 0 0 chr21 19504397 19504484 -28625411 - L1PA4 LINE L1 0 6155 6069 2 733 269 250 78 0 chr21 19505409 19505473 -28624422 + MLT1I LTR ERVL-MaLR 107 175 -236 2 733 1324 261 111 24 chr21 19505809 19506268 -28623627 + LTR40a LTR ERVL 19 517 -2 2 733 203 61 30 0 chr21 19506305 19506338 -28623557 + (TCTA)n Simple_repeat Simple_repeat 1 34 0 2 733 231 347 30 20 chr21 19507684 19507784 -28622111 - Charlie15a DNA hAT-Charlie -37 187 87 2 733 227 348 3 25 chr21 19508026 19508125 -28621770 + L2a LINE L2 3278 3426 0 2 733 2310 127 0 0 chr21 19508143 19508450 -28621445 + AluSc SINE Alu 1 307 -2 2 733 493 162 0 18 chr21 19509036 19509149 -28620746 + (TA)n Simple_repeat Simple_repeat 1 111 0 2 733 407 361 84 29 chr21 19509376 19509755 -28620140 - LTR85c LTR Gypsy? -7 816 417 2 733 207 333 0 0 chr21 19511369 19511441 -28618454 + (TG)n Simple_repeat Simple_repeat 2 73 0 2 733 250 315 62 42 chr21 19512526 19512622 -28617273 + MIR3 SINE MIR 75 172 -36 2 733 30 59 0 0 chr21 19513585 19513636 -28616259 + AT_rich Low_complexity Low_complexity 1 51 0 2 733 828 303 29 0 chr21 19515818 19516059 -28613836 + MIR SINE MIR 15 262 0 2 733 22 35 0 0 chr21 19516554 19516583 -28613312 + AT_rich Low_complexity Low_complexity 1 29 0 2 733 2601 46 3 3 chr21 19517471 19517774 -28612121 + AluY SINE Alu 1 303 -8 2 733 2122 88 3 33 chr21 19518258 19518279 -28611616 - AluY SINE Alu -4 307 287 2 733 180 0 0 0 chr21 19518279 19518299 -28611596 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2 733 2122 88 3 33 chr21 19518299 19518582 -28611313 - AluY SINE Alu -25 286 13 2 733 2196 158 5 13 chr21 19518639 19519017 -28610878 + THE1C LTR ERVL-MaLR 1 375 0 2 733 839 178 7 27 chr21 19519922 19520072 -28609823 - MER58B DNA hAT-Charlie 0 341 195 2 733 441 317 77 43 chr21 19520092 19520326 -28609569 + MLT1L LTR ERVL-MaLR 22 263 -347 2 733 190 211 140 0 chr21 19521284 19521341 -28608554 + L4 LINE RTE 1705 1769 -260 2 733 382 206 0 0 chr21 19522101 19522174 -28607721 - MLT1A0 LTR ERVL-MaLR 0 365 293 2 733 2940 128 19 12 chr21 19522179 19522774 -28607121 - MER4E LTR ERV1 0 766 1 2 733 651 270 15 20 chr21 19522776 19522980 -28606915 - MLT1A0 LTR ERVL-MaLR -76 289 87 2 733 3444 222 66 63 chr21 19522987 19523121 -28606774 + MER21A LTR ERVL 30 183 -748 2 733 2478 84 3 0 chr21 19523121 19523429 -28606466 + AluSg7 SINE Alu 1 309 -3 2 733 3444 222 66 63 chr21 19523429 19524187 -28605708 + MER21A LTR ERVL 184 925 -6 2 733 500 151 70 0 chr21 19524196 19524282 -28605613 - MLT1A0 LTR ERVL-MaLR -278 96 5 2 733 417 20 0 0 chr21 19524305 19524355 -28605540 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 733 1637 205 76 19 chr21 19524611 19524979 -28604916 - MLT1E1A LTR ERVL-MaLR -2 678 290 2 733 493 244 86 8 chr21 19525008 19525136 -28604759 - MLT1E1A LTR ERVL-MaLR -542 138 1 2 733 1779 254 7 39 chr21 19525373 19525815 -28604080 - MLT1E2 LTR ERVL-MaLR 0 627 200 2 733 378 257 49 56 chr21 19525786 19525926 -28603969 - MLT1E2 LTR ERVL-MaLR -372 255 117 2 733 772 176 0 8 chr21 19525926 19526058 -28603837 + MER34A LTR ERV1 3 133 -438 2 733 479 234 142 65 chr21 19526119 19526366 -28603529 - MLT1J1 LTR ERVL-MaLR -20 424 159 2 733 271 220 0 0 chr21 19526396 19526446 -28603449 - MLT1J1 LTR ERVL-MaLR -366 78 29 2 733 591 215 25 83 chr21 19526622 19526779 -28603116 + MER34A LTR ERV1 162 309 -262 2 733 512 191 35 0 chr21 19526778 19526893 -28603002 + MER34A LTR ERV1 443 561 -10 2 733 353 169 223 53 chr21 19526958 19527052 -28602843 - MLT1E3 LTR ERVL-MaLR -514 110 1 2 733 248 230 115 39 chr21 19527584 19527688 -28602207 - LTR79 LTR ERVL -196 331 220 2 733 472 200 0 20 chr21 19528617 19528719 -28601176 - L1M3 LINE L1 -985 5155 5056 2 733 205 171 0 0 chr21 19528720 19528755 -28601140 + (CATA)n Simple_repeat Simple_repeat 2 36 0 2 733 44 35 0 0 chr21 19528768 19528826 -28601069 + AT_rich Low_complexity Low_complexity 1 58 0 2 733 1197 270 95 59 chr21 19529013 19529572 -28600323 - MLT1G3 LTR ERVL-MaLR -14 581 3 2 734 2482 100 0 0 chr21 19530872 19531183 -28598712 + AluSq2 SINE Alu 1 311 -1 2 734 794 161 171 36 chr21 19531382 19531575 -28598320 + MER20 DNA hAT-Charlie 1 219 0 2 734 1460 254 55 36 chr21 19531912 19532406 -28597489 + MLT1D LTR ERVL-MaLR 3 505 0 2 734 493 328 44 17 chr21 19532410 19532590 -28597305 - MIRb SINE MIR -58 210 26 2 734 6261 83 19 5 chr21 19532649 19533535 -28596360 - L1PA13 LINE L1 0 6163 5265 2 734 764 269 28 161 chr21 19534216 19534470 -28595425 - L1ME3A LINE L1 -16 6157 5939 2 734 2452 195 2 31 chr21 19534470 19534728 -28595167 - MLT1C LTR ERVL-MaLR 0 467 209 2 734 381 43 0 0 chr21 19534728 19534775 -28595120 + (TC)n Simple_repeat Simple_repeat 2 48 0 2 734 2452 195 2 31 chr21 19534775 19534997 -28594898 - MLT1C LTR ERVL-MaLR -259 208 1 2 734 764 269 28 161 chr21 19534997 19535124 -28594771 - L1ME3A LINE L1 -235 5938 5828 2 734 750 229 0 0 chr21 19535124 19535255 -28594640 - FLAM_A SINE Alu -10 132 2 2 734 764 269 28 161 chr21 19535255 19535333 -28594562 - L1ME3A LINE L1 -346 5827 5758 2 734 391 269 17 9 chr21 19535370 19535486 -28594409 - L1ME3A LINE L1 -466 5776 5660 2 734 302 320 12 78 chr21 19535591 19535757 -28594138 + MER103C DNA hAT-Charlie 2 156 -141 2 734 22 56 0 0 chr21 19535889 19535925 -28593970 + AT_rich Low_complexity Low_complexity 1 36 0 2 734 533 284 108 13 chr21 19536798 19536955 -28592940 + MIRb SINE MIR 26 197 -71 2 734 711 304 71 93 chr21 19536956 19537323 -28592572 + L2 LINE L2 2324 2689 -730 2 734 898 242 38 5 chr21 19537323 19537535 -28592360 - MER20 DNA hAT-Charlie 0 219 1 2 734 711 304 71 93 chr21 19537535 19537563 -28592332 + L2 LINE L2 2690 2710 -709 2 734 619 225 48 30 chr21 19537735 19537900 -28591995 - MLT1G1 LTR ERVL-MaLR -2 577 410 2 734 604 340 39 32 chr21 19537893 19538173 -28591722 - MLT1G1 LTR ERVL-MaLR -297 282 1 2 734 1878 266 109 21 chr21 19538232 19538855 -28591040 - MLT1E1A LTR ERVL-MaLR 0 680 3 2 734 583 308 128 66 chr21 19538964 19539521 -28590374 - L1ME3A LINE L1 -2267 3879 3289 2 734 405 0 0 0 chr21 19539528 19539573 -28590322 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 734 2502 77 0 0 chr21 19539626 19539925 -28589970 - AluY SINE Alu -12 299 1 2 734 247 219 45 67 chr21 19540014 19540104 -28589791 - MIR SINE MIR -50 218 117 2 734 2109 186 38 32 chr21 19540108 19540652 -28589243 + MLT2A2 LTR ERVL 1 554 0 2 734 331 288 25 0 chr21 19540656 19540736 -28589159 - MIR SINE MIR -149 113 32 2 734 2045 168 35 10 chr21 19540743 19541316 -28588579 - L1M4 LINE L1 -669 6003 5415 2 734 2563 242 120 51 chr21 19541283 19543384 -28586511 - L1M4 LINE L1 -2452 4192 1968 2 734 4572 224 53 47 chr21 19543391 19543505 -28586390 - L1M4 LINE L1 -5192 1350 1218 2 734 2913 22 0 3 chr21 19543505 19543823 -28586072 - AluYb8 SINE Alu -1 317 1 2 734 4572 224 53 47 chr21 19543823 19545036 -28584859 - L1M4 LINE L1 -5325 1217 17 2 734 1888 253 78 75 chr21 19545056 19545700 -28584195 - MLT1E LTR ERVL-MaLR -4 649 4 2 734 426 79 0 0 chr21 19546415 19546478 -28583417 + (TA)n Simple_repeat Simple_repeat 1 63 0 2 734 542 292 84 0 chr21 19547199 19547401 -28582494 + MIR SINE MIR 3 221 -41 2 734 424 315 160 49 chr21 19547587 19547636 -28582259 - L2c LINE L2 0 3387 3318 2 734 2271 103 7 0 chr21 19547636 19547927 -28581968 + AluSx3 SINE Alu 9 301 -11 2 734 424 315 160 49 chr21 19547927 19548184 -28581711 - L2c LINE L2 -70 3317 3048 2 734 651 321 86 6 chr21 19548262 19548588 -28581307 - L2c LINE L2 -938 2481 2130 2 734 29 28 0 0 chr21 19549362 19549398 -28580497 + AT_rich Low_complexity Low_complexity 1 36 0 2 734 380 374 55 28 chr21 19549496 19549713 -28580182 - MIRb SINE MIR -23 245 23 2 734 2464 153 18 23 chr21 19550720 19551154 -28578741 - Tigger2a DNA TcMar-Tigger 0 434 3 2 734 525 279 61 7 chr21 19552301 19552449 -28577446 + MIR SINE MIR 107 262 0 2 734 1785 181 31 0 chr21 19552468 19552760 -28577135 - AluJb SINE Alu -11 301 1 2 734 491 300 119 22 chr21 19553084 19553313 -28576582 + MIRb SINE MIR 3 257 -11 2 734 2481 197 52 61 chr21 19553565 19553707 -28576188 - L1MB8 LINE L1 -17 6161 6015 2 734 2480 70 0 0 chr21 19553707 19554006 -28575889 - AluYc SINE Alu 0 299 1 2 734 2481 197 52 61 chr21 19554006 19554502 -28575393 - L1MB8 LINE L1 -164 6014 5529 2 734 334 262 14 100 chr21 19554551 19554691 -28575204 - MIRb SINE MIR -122 146 19 2 734 761 163 35 0 chr21 19554720 19554861 -28575034 + L1MA9 LINE L1 6167 6312 0 2 734 242 355 26 26 chr21 19557059 19557172 -28572723 - MamGypLTR1b LTR Gypsy -298 484 372 2 734 3892 61 2 2 chr21 19557340 19557846 -28572049 - L1PA7 LINE L1 0 6154 5649 2 734 287 189 26 26 chr21 19557898 19557974 -28571921 - MLT1A0 LTR ERVL-MaLR 0 595 520 2 734 1883 196 22 25 chr21 19557976 19558342 -28571553 - MLT1A0 LTR ERVL-MaLR 0 365 1 2 734 314 328 51 8 chr21 19558530 19558647 -28571248 - MLT1K LTR ERVL-MaLR -316 279 158 2 734 26 0 0 0 chr21 19558712 19558738 -28571157 + AT_rich Low_complexity Low_complexity 1 26 0 2 734 1040 328 191 25 chr21 19559834 19560748 -28569147 + L2a LINE L2 1412 2477 -942 2 734 2062 169 58 67 chr21 19561056 19561505 -28568390 - MER65A LTR ERV1 0 445 1 2 734 5101 251 98 51 chr21 19561632 19561946 -28567949 + Charlie6 DNA hAT-Charlie 54 384 -3116 2 734 2468 92 0 0 chr21 19561946 19562250 -28567645 - AluSx SINE Alu -7 305 2 2 734 5101 251 98 51 chr21 19562250 19563791 -28566104 + Charlie6 DNA hAT-Charlie 385 1995 -1505 2 734 861 216 5 5 chr21 19563793 19563993 -28565902 - L1M3 LINE L1 -692 5476 5277 2 734 1342 176 0 19 chr21 19563996 19564257 -28565638 + L1MB1 LINE L1 5873 6128 -40 2 734 4309 216 115 31 chr21 19564264 19565655 -28564240 + Charlie6 DNA hAT-Charlie 1993 3500 0 2 734 2119 110 7 20 chr21 19565730 19566082 -28563813 + AluSx SINE Alu 1 312 0 2 734 555 321 61 96 chr21 19566197 19566947 -28562948 + L2a LINE L2 2484 3205 -221 2 734 819 162 27 22 chr21 19566947 19567130 -28562765 - L1MA8 LINE L1 -12 6279 6096 2 734 2417 139 14 69 chr21 19567139 19567345 -28562550 - L1MA8 LINE L1 -2 6289 6098 2 734 2366 85 0 0 chr21 19567345 19567670 -28562225 - AluY SINE Alu 0 311 1 2 734 2417 139 14 69 chr21 19567670 19567955 -28561940 - L1MA8 LINE L1 -194 6097 5824 2 734 555 304 44 136 chr21 19567955 19568165 -28561730 + L2a LINE L2 3211 3408 -18 2 734 334 197 14 14 chr21 19568333 19568405 -28561490 + MIR3 SINE MIR 119 190 -18 2 734 1813 166 39 60 chr21 19569054 19569471 -28560424 + L1MA9 LINE L1 5901 6310 -2 2 734 22 56 0 0 chr21 19569512 19569548 -28560347 + AT_rich Low_complexity Low_complexity 1 36 0 2 734 2081 130 3 16 chr21 19569645 19569953 -28559942 + AluSz SINE Alu 1 304 -8 2 734 3682 198 56 16 chr21 19571626 19572463 -28557432 - L1MC2 LINE L1 -11 6333 5463 2 734 1416 232 107 5 chr21 19572993 19573405 -28556490 + MLT1C LTR ERVL-MaLR 6 459 -8 2 734 23 0 0 0 chr21 19573636 19573659 -28556236 + AT_rich Low_complexity Low_complexity 1 23 0 2 734 2554 66 0 3 chr21 19574117 19574421 -28555474 - AluY SINE Alu -8 303 1 2 734 981 234 74 130 chr21 19574607 19575000 -28554895 + MLT1A LTR ERVL-MaLR 4 374 0 2 734 21 0 0 0 chr21 19575783 19575804 -28554091 + AT_rich Low_complexity Low_complexity 1 21 0 2 734 664 303 70 0 chr21 19575909 19576153 -28553742 - Charlie19a DNA hAT-Charlie -2 384 124 2 734 2626 102 20 2 chr21 19577385 19577779 -28552116 - L1M1 LINE L1 -1972 5593 5193 2 734 1450 152 14 0 chr21 19577771 19578053 -28551842 - L1M1 LINE L1 -2990 4575 4290 2 734 1239 130 0 0 chr21 19578054 19578223 -28551672 - AluSx SINE Alu -13 299 131 2 734 21040 150 17 24 chr21 19578223 19579180 -28550715 - L1M1 LINE L1 -3267 4298 3347 2 734 320 0 25 0 chr21 19579180 19579220 -28550675 + (TTA)n Simple_repeat Simple_repeat 3 43 0 2 734 3150 39 3 0 chr21 19579220 19579601 -28550294 - L1PA6 LINE L1 -18 6136 5755 2 734 21040 141 40 31 chr21 19579601 19582890 -28547005 - L1M1 LINE L1 -4219 3346 18 2 734 963 292 132 59 chr21 19582890 19583458 -28546437 + L2a LINE L2 2541 3199 -227 2 734 294 50 0 0 chr21 19583458 19583498 -28546397 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 734 549 314 197 16 chr21 19583498 19583715 -28546180 + L2a LINE L2 3200 3425 -1 2 734 481 229 0 0 chr21 19584035 19584131 -28545764 - MER3 DNA hAT-Charlie -103 106 11 2 734 26 0 0 0 chr21 19584808 19584834 -28545061 + AT_rich Low_complexity Low_complexity 1 26 0 2 734 254 380 82 75 chr21 19586504 19586797 -28543098 + L2b LINE L2 3073 3367 -8 2 734 21 0 0 0 chr21 19587357 19587378 -28542517 + AT_rich Low_complexity Low_complexity 1 21 0 2 734 295 347 68 23 chr21 19587701 19587922 -28541973 + MLT1K LTR ERVL-MaLR 364 594 -1 2 734 222 312 0 0 chr21 19588372 19588449 -28541446 + T-rich Low_complexity Low_complexity 3 79 0 2 734 3754 172 10 10 chr21 19588465 19588926 -28540969 - L1MA4 LINE L1 -11 6991 6535 2 734 2276 115 38 8 chr21 19588926 19589295 -28540600 - THE1D LTR ERVL-MaLR -1 380 1 2 734 3754 172 10 10 chr21 19589295 19589539 -28540356 - L1MA4 LINE L1 -468 6534 6286 2 734 2306 147 3 3 chr21 19589540 19589915 -28539980 - THE1C LTR ERVL-MaLR 0 375 1 2 734 9666 114 70 33 chr21 19589920 19591438 -28538457 - THE1C-int LTR ERVL-MaLR -6 1574 1 2 734 2392 132 11 8 chr21 19591438 19591812 -28538083 - THE1C LTR ERVL-MaLR 0 375 1 2 734 2205 138 9 15 chr21 19591812 19592430 -28537465 - L1MA4 LINE L1 -713 6289 5670 2 734 7570 249 133 20 chr21 19592430 19595169 -28534726 - L1MA4 LINE L1 -3784 3061 2 2 734 186 71 0 0 chr21 19595631 19595659 -28534236 + (TTAAA)n Simple_repeat Simple_repeat 3 30 0 2 734 275 240 104 0 chr21 19596046 19596142 -28533753 + MLT1J2 LTR ERVL-MaLR 343 448 0 2 734 555 272 42 48 chr21 19596579 19596768 -28533127 + MIR SINE MIR 33 220 -42 2 734 336 232 9 75 chr21 19597215 19597322 -28532573 + L1ME3A LINE L1 6019 6118 -55 2 734 2053 148 7 0 chr21 19598624 19598915 -28530980 - AluSz SINE Alu -19 293 1 2 734 27 29 0 0 chr21 19598980 19599014 -28530881 + AT_rich Low_complexity Low_complexity 1 34 0 2 734 2039 158 46 6 chr21 19599251 19599602 -28530293 - MLT1A0 LTR ERVL-MaLR 0 365 1 2 734 273 343 86 38 chr21 19599874 19600083 -28529812 + MIRc SINE MIR 17 235 -33 2 734 261 344 61 111 chr21 19601598 19601994 -28527901 - MLT1I LTR ERVL-MaLR -32 379 4 2 734 444 216 22 45 chr21 19604428 19604606 -28525289 - MER113B DNA hAT-Charlie -42 260 87 2 734 1638 182 54 9 chr21 19604606 19604955 -28524940 - MLT1A0 LTR ERVL-MaLR 0 365 1 2 734 444 216 22 45 chr21 19604955 19604999 -28524896 - MER113B DNA hAT-Charlie -216 86 44 2 734 402 140 7 162 chr21 19605215 19605259 -28524636 - L1MA7 LINE L1 -18 6273 6231 2 734 339 25 0 0 chr21 19605259 19605299 -28524596 + (TA)n Simple_repeat Simple_repeat 2 41 0 2 734 1224 152 2 53 chr21 19605299 19605576 -28524319 - L1MA7 LINE L1 -61 6230 5867 2 734 949 220 56 24 chr21 19605600 19605851 -28524044 + MIR SINE MIR 4 262 0 2 734 21 0 0 0 chr21 19607689 19607710 -28522185 + AT_rich Low_complexity Low_complexity 1 21 0 2 734 2215 146 13 19 chr21 19608342 19608719 -28521176 - THE1C LTR ERVL-MaLR 0 375 1 2 734 221 220 67 17 chr21 19609196 19609256 -28520639 - L2a LINE L2 -10 3416 3354 2 734 200 217 43 0 chr21 19610191 19610237 -28519658 - L2a LINE L2 -103 3323 3276 2 734 193 133 0 0 chr21 19610263 19610293 -28519602 + L2b LINE L2 3338 3367 -8 2 734 2295 115 11 8 chr21 19610550 19610902 -28518993 - THE1A LTR ERVL-MaLR -2 353 1 2 734 204 290 0 31 chr21 19612232 19612296 -28517599 + GA-rich Low_complexity Low_complexity 4 65 0 2 734 479 291 58 10 chr21 19612365 19612573 -28517322 - Charlie23a DNA hAT-Charlie -1 338 121 2 734 361 273 47 8 chr21 19613851 19613980 -28515915 - Helitron3Na_Mam RC Helitron -47 439 306 2 734 323 325 31 6 chr21 19615001 19615162 -28514733 - Charlie19a DNA hAT-Charlie -165 221 57 2 734 626 172 164 0 chr21 19615864 19615986 -28513909 - AluJo SINE Alu -16 296 155 2 734 191 317 17 0 chr21 19616005 19616065 -28513830 + MIR3 SINE MIR 141 201 -7 2 734 830 102 55 9 chr21 19620901 19621468 -28508427 + (TA)n Simple_repeat Simple_repeat 1 593 0 2 734 448 272 183 0 chr21 19621990 19622159 -28507736 + MIR SINE MIR 1 200 -62 2 734 249 371 177 0 chr21 19622158 19622282 -28507613 + MER91A DNA hAT-Tip100 15 160 -36 2 734 216 315 89 37 chr21 19622454 19622589 -28507306 - MIR SINE MIR -118 144 3 2 734 43 35 0 0 chr21 19622742 19622799 -28507096 + AT_rich Low_complexity Low_complexity 1 57 0 2 734 22 80 0 0 chr21 19622862 19622912 -28506983 + AT_rich Low_complexity Low_complexity 1 50 0 2 734 26 88 0 0 chr21 19623229 19623297 -28506598 + AT_rich Low_complexity Low_complexity 1 68 0 2 734 252 162 62 18 chr21 19623694 19623807 -28506088 + T-rich Low_complexity Low_complexity 5 122 0 2 734 29 0 0 0 chr21 19623807 19623836 -28506059 + AT_rich Low_complexity Low_complexity 1 29 0 2 734 213 88 6 128 chr21 19623836 19623992 -28505903 + T-rich Low_complexity Low_complexity 2 138 0 2 734 70 11 0 11 chr21 19623992 19624042 -28505853 + AT_rich Low_complexity Low_complexity 1 50 0 2 734 181 0 0 65 chr21 19624042 19624073 -28505822 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 2 734 70 11 0 11 chr21 19624073 19624110 -28505785 + AT_rich Low_complexity Low_complexity 1 37 0 2 734 624 94 0 10 chr21 19624168 19624265 -28505630 + L1PA12 LINE L1 6071 6166 -2 2 734 21 57 0 0 chr21 19624285 19624320 -28505575 + AT_rich Low_complexity Low_complexity 1 35 0 2 734 181 130 65 0 chr21 19627005 19627051 -28502844 + (TCTA)n Simple_repeat Simple_repeat 1 49 0 2 734 33 56 0 0 chr21 19629707 19629761 -28500134 + AT_rich Low_complexity Low_complexity 1 54 0 2 734 21 0 0 0 chr21 19630789 19630810 -28499085 + AT_rich Low_complexity Low_complexity 1 21 0 2 734 26 30 0 0 chr21 19630966 19630999 -28498896 + AT_rich Low_complexity Low_complexity 1 33 0 2 734 201 192 0 19 chr21 19631059 19631112 -28498783 + T-rich Low_complexity Low_complexity 4 55 0 2 734 22 35 0 0 chr21 19631213 19631242 -28498653 + AT_rich Low_complexity Low_complexity 1 29 0 2 734 996 117 30 12 chr21 19631696 19631861 -28498034 + L1PA11 LINE L1 6007 6174 0 2 734 21 0 0 0 chr21 19631933 19631954 -28497941 + AT_rich Low_complexity Low_complexity 1 21 0 2 734 33 25 0 0 chr21 19632425 19632465 -28497430 + AT_rich Low_complexity Low_complexity 1 40 0 2 734 1892 160 7 3 chr21 19632847 19633134 -28496761 + AluJb SINE Alu 1 288 -24 2 734 329 58 19 0 chr21 19633137 19633189 -28496706 + (CAA)n Simple_repeat Simple_repeat 2 54 0 2 734 522 29 0 0 chr21 19633620 19633690 -28496205 + L1PA2 LINE L1 6086 6155 0 2 734 2206 111 3 10 chr21 19633700 19633997 -28495898 + AluSx1 SINE Alu 1 295 -17 2 734 30 45 0 0 chr21 19634314 19634358 -28495537 + AT_rich Low_complexity Low_complexity 1 44 0 2 734 1803 159 21 93 chr21 19634572 19634947 -28494948 - Tigger3a DNA TcMar-Tigger 0 348 1 2 734 236 366 24 0 chr21 19635365 19635488 -28494407 - MIR SINE MIR -61 201 76 2 734 1972 99 0 0 chr21 19636689 19636941 -28492954 + AluSx1 SINE Alu 54 305 -7 2 734 455 67 0 0 chr21 19637435 19637495 -28492400 + L1PB1 LINE L1 5731 5790 -361 2 734 549 191 0 0 chr21 19637496 19637606 -28492289 + (TA)n Simple_repeat Simple_repeat 1 110 0 2 734 207 0 0 0 chr21 19637605 19637628 -28492267 + (CA)n Simple_repeat Simple_repeat 2 24 0 2 734 2448 125 0 3 chr21 19637628 19637998 -28491897 + L1PB1 LINE L1 5782 6150 -1 2 734 1925 141 68 42 chr21 19640583 19640938 -28488957 + THE1B LTR ERVL-MaLR 1 364 0 2 734 23 0 0 0 chr21 19642110 19642133 -28487762 + AT_rich Low_complexity Low_complexity 1 23 0 2 734 43 47 0 0 chr21 19642495 19642559 -28487336 + AT_rich Low_complexity Low_complexity 1 64 0 2 734 22 35 0 0 chr21 19643038 19643067 -28486828 + AT_rich Low_complexity Low_complexity 1 29 0 2 734 194 356 56 33 chr21 19643478 19643568 -28486327 + L2c LINE L2 3287 3378 -9 2 734 195 42 0 0 chr21 19643902 19643926 -28485969 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 2 734 5372 78 25 6 chr21 19643931 19644663 -28485232 - L1PA8A LINE L1 -13 6118 5373 2 734 2274 98 0 3 chr21 19644758 19645088 -28484807 + AluSq SINE Alu 1 313 0 2 734 875 190 51 6 chr21 19645244 19645419 -28484476 - MER5A DNA hAT-Charlie -6 183 1 2 734 381 264 463 7 chr21 19646527 19646678 -28483217 - MIR SINE MIR -48 220 1 2 734 413 257 80 14 chr21 19648569 19648707 -28481188 - MER63B DNA hAT-Blackjack 0 436 290 2 734 2443 80 0 19 chr21 19649069 19649382 -28480513 - AluSq2 SINE Alu -5 307 1 2 734 2314 96 0 10 chr21 19650754 19651056 -28478839 + AluY SINE Alu 1 299 -12 2 734 207 0 0 0 chr21 19651241 19651264 -28478631 + (T)n Simple_repeat Simple_repeat 1 23 0 2 734 2647 50 0 28 chr21 19651630 19651950 -28477945 - AluY SINE Alu 0 311 1 2 734 29 0 0 0 chr21 19651999 19652028 -28477867 + AT_rich Low_complexity Low_complexity 1 29 0 2 734 348 315 129 35 chr21 19652260 19652431 -28477464 - L2c LINE L2 -24 3363 3177 2 734 2298 104 16 16 chr21 19652611 19652920 -28476975 + AluSc8 SINE Alu 1 309 -3 2 734 351 214 29 48 chr21 19653786 19653889 -28476006 - MER5B DNA hAT-Charlie -2 176 76 2 734 2705 48 0 3 chr21 19654133 19654442 -28475453 + AluY SINE Alu 2 309 -2 2 734 196 362 43 0 chr21 19654993 19655062 -28474833 - MIRb SINE MIR -29 239 168 2 734 226 207 31 146 chr21 19655629 19655759 -28474136 + Helitron1Nb_Mam RC Helitron 132 246 -870 2 734 21 0 0 0 chr21 19655773 19655794 -28474101 + AT_rich Low_complexity Low_complexity 1 21 0 2 734 293 367 10 10 chr21 19656667 19656766 -28473129 - MER5A DNA hAT-Charlie -28 161 63 2 734 2117 99 4 0 chr21 19657070 19657343 -28472552 + AluSq2 SINE Alu 36 309 -3 2 734 184 277 0 0 chr21 19657585 19657632 -28472263 + MIR3 SINE MIR 93 139 -69 2 734 365 322 41 32 chr21 19657823 19658041 -28471854 + L1MC4 LINE L1 6762 6981 -1061 2 734 21 0 0 0 chr21 19658252 19658273 -28471622 + AT_rich Low_complexity Low_complexity 1 21 0 2 734 1151 333 165 36 chr21 19658413 19659568 -28470327 + L2a LINE L2 2095 3426 0 2 734 2989 179 14 0 chr21 19660243 19660800 -28469095 + L1PB4 LINE L1 5586 6150 -6 2 735 2263 91 19 23 chr21 19660845 19661152 -28468743 - AluSx3 SINE Alu -6 306 1 2 735 21 57 0 0 chr21 19661282 19661317 -28468578 + AT_rich Low_complexity Low_complexity 1 35 0 2 735 2402 88 3 0 chr21 19661547 19661843 -28468052 + AluSp SINE Alu 1 297 -16 2 735 600 287 165 37 chr21 19662124 19662818 -28467077 + L1MC4 LINE L1 5980 6961 -1081 2 735 375 284 78 7 chr21 19662829 19662971 -28466924 + L1MC4 LINE L1 7517 7668 -374 2 735 627 267 59 16 chr21 19663046 19663301 -28466594 + L1MC4 LINE L1 7777 8042 0 2 735 439 312 58 23 chr21 19663438 19663612 -28466283 - MIRb SINE MIR -64 204 25 2 735 3226 159 39 2 chr21 19664218 19664755 -28465140 + MER41D LTR ERV1 1 557 0 2 735 725 308 63 8 chr21 19667094 19667346 -28462549 + MIRb SINE MIR 2 267 -1 2 735 2637 56 0 3 chr21 19668187 19668492 -28461403 + AluY SINE Alu 1 304 -7 2 735 196 111 22 22 chr21 19668641 19668687 -28461208 + A-rich Low_complexity Low_complexity 3 48 0 2 735 24 77 0 0 chr21 19668913 19668965 -28460930 + AT_rich Low_complexity Low_complexity 1 52 0 2 735 490 278 0 72 chr21 19672046 19672240 -28457655 + MER5A DNA hAT-Charlie 7 186 -3 2 735 728 119 20 20 chr21 19672503 19672649 -28457246 + T-rich Low_complexity Low_complexity 3 148 0 2 735 2098 126 30 10 chr21 19672660 19672961 -28456934 - AluSz SINE Alu -5 307 1 2 735 24 32 0 0 chr21 19673022 19673053 -28456842 + AT_rich Low_complexity Low_complexity 1 31 0 2 735 245 324 14 0 chr21 19675060 19675134 -28454761 + L4 LINE RTE 1341 1415 -614 2 735 216 0 0 0 chr21 19675225 19675249 -28454646 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 2 735 473 304 138 24 chr21 19675259 19675556 -28454339 + L4 LINE RTE 1590 1920 -109 2 735 321 333 18 0 chr21 19675617 19675731 -28454164 + GA-rich Low_complexity Low_complexity 1 116 0 2 735 1073 253 98 34 chr21 19676775 19677184 -28452711 + Charlie4a DNA hAT-Charlie 4 438 -70 2 735 598 228 14 132 chr21 19677371 19677500 -28452395 - MER5A DNA hAT-Charlie -2 187 60 2 735 2818 23 0 0 chr21 19677500 19677804 -28452091 - AluY SINE Alu -7 304 1 2 735 598 228 14 132 chr21 19677804 19677886 -28452009 - MER5A DNA hAT-Charlie -130 59 1 2 735 27 29 0 0 chr21 19678357 19678391 -28451504 + AT_rich Low_complexity Low_complexity 1 34 0 2 735 225 275 362 0 chr21 19679764 19679924 -28449971 + L2c LINE L2 3107 3324 -63 2 735 261 0 0 0 chr21 19680693 19680722 -28449173 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 735 4698 45 12 2 chr21 19680915 19681499 -28448396 - L1PA7 LINE L1 -1 6153 5564 2 735 3348 68 0 52 chr21 19681500 19682169 -28447726 + L1PA7 LINE L1 4918 5565 -589 2 735 7423 151 13 25 chr21 19682353 19684157 -28445738 + L1M2 LINE L1 3961 5745 -555 2 735 184 372 0 0 chr21 19684328 19684379 -28445516 - L2c LINE L2 -70 3317 3267 2 735 21 57 0 0 chr21 19684772 19684807 -28445088 + AT_rich Low_complexity Low_complexity 1 35 0 2 735 1327 177 57 7 chr21 19685374 19685653 -28444242 + L1MA7 LINE L1 5926 6218 -73 2 735 226 143 16 16 chr21 19685742 19685806 -28444089 + L1MA7 LINE L1 6216 6279 -12 2 735 447 269 113 52 chr21 19686466 19686598 -28443297 + MIRb SINE MIR 26 154 -114 2 735 2366 91 3 0 chr21 19686598 19686894 -28443001 - AluSq2 SINE Alu -15 297 1 2 735 447 269 113 52 chr21 19686894 19686973 -28442922 + MIRb SINE MIR 155 250 -18 2 735 801 38 19 0 chr21 19687707 19687812 -28442083 + L1PA5 LINE L1 6039 6145 -9 2 735 22 0 0 0 chr21 19687812 19687834 -28442061 + AT_rich Low_complexity Low_complexity 1 22 0 2 735 873 47 0 0 chr21 19687881 19687988 -28441907 + L1PA5 LINE L1 6039 6145 -9 2 735 22 0 0 0 chr21 19687988 19688010 -28441885 + AT_rich Low_complexity Low_complexity 1 22 0 2 735 898 37 0 0 chr21 19688057 19688164 -28441731 + L1PA5 LINE L1 6039 6145 -9 2 735 853 65 0 0 chr21 19688235 19688342 -28441553 + L1PA5 LINE L1 6039 6145 -9 2 735 26 0 0 0 chr21 19688342 19688368 -28441527 + AT_rich Low_complexity Low_complexity 1 26 0 2 735 290 259 53 18 chr21 19689762 19689876 -28440019 + LTR78B LTR ERV1 271 388 -908 2 735 192 40 0 0 chr21 19690009 19690034 -28439861 + (TG)n Simple_repeat Simple_repeat 2 26 0 2 735 1362 57 0 0 chr21 19690072 19690248 -28439647 + (CATCC)n Simple_repeat Simple_repeat 3 178 0 2 735 30 0 0 0 chr21 19690723 19690753 -28439142 + AT_rich Low_complexity Low_complexity 1 30 0 2 735 298 335 73 49 chr21 19691457 19691697 -28438198 + MIRc SINE MIR 17 263 -5 2 735 2523 65 3 3 chr21 19691739 19692045 -28437850 - AluSp SINE Alu -7 306 1 2 735 27 29 0 0 chr21 19692551 19692585 -28437310 + AT_rich Low_complexity Low_complexity 1 34 0 2 735 2558 68 7 0 chr21 19693657 19693966 -28435929 - AluY SINE Alu 0 311 1 2 735 4330 164 11 21 chr21 19694517 19695339 -28434556 + L1MA4 LINE L1 5480 6293 -7 2 735 2262 131 28 8 chr21 19695541 19695894 -28434001 - THE1B LTR ERVL-MaLR -4 360 1 2 735 300 367 54 59 chr21 19696211 19696654 -28433241 - L1MC4 LINE L1 -4630 1585 1145 2 735 28 0 0 0 chr21 19696913 19696941 -28432954 + AT_rich Low_complexity Low_complexity 1 28 0 2 735 252 212 0 0 chr21 19698110 19698176 -28431719 + (TA)n Simple_repeat Simple_repeat 2 67 0 2 735 1563 108 0 0 chr21 19700168 19700371 -28429524 + AluSx3 SINE Alu 81 283 -29 2 735 25 51 0 0 chr21 19700555 19700594 -28429301 + AT_rich Low_complexity Low_complexity 1 39 0 2 735 2180 124 22 3 chr21 19700887 19701243 -28428652 + L1MA3 LINE L1 5943 6305 0 2 735 24 0 0 0 chr21 19702030 19702054 -28427841 + AT_rich Low_complexity Low_complexity 1 24 0 2 735 350 359 139 30 chr21 19702149 19702775 -28427120 + L2 LINE L2 2241 2934 -485 2 735 21 0 0 0 chr21 19703003 19703024 -28426871 + AT_rich Low_complexity Low_complexity 1 21 0 2 735 2633 47 0 3 chr21 19703107 19703408 -28426487 + AluY SINE Alu 1 300 -11 2 735 370 333 19 0 chr21 19704111 19704247 -28425648 + MIRb SINE MIR 127 262 0 2 735 1056 89 47 6 chr21 19704688 19704858 -28425037 - L1PA13 LINE L1 -743 5403 5227 2 735 4790 112 8 1 chr21 19704858 19705576 -28424319 + L1PA13 LINE L1 5440 6162 -1 2 735 349 267 0 37 chr21 19705595 19705704 -28424191 + MER103C DNA hAT-Charlie 138 242 -55 2 735 23 33 0 0 chr21 19705855 19705885 -28424010 + AT_rich Low_complexity Low_complexity 1 30 0 2 735 268 379 101 11 chr21 19706912 19707091 -28422804 - MIRc SINE MIR -72 196 2 2 735 21 0 0 0 chr21 19708854 19708875 -28421020 + AT_rich Low_complexity Low_complexity 1 21 0 2 735 751 217 0 63 chr21 19708976 19709151 -28420744 - AluJr SINE Alu -12 300 137 2 735 796 171 0 0 chr21 19709393 19709510 -28420385 - AluJr SINE Alu -195 117 1 2 735 348 103 0 0 chr21 19711011 19711069 -28418826 + (GA)n Simple_repeat Simple_repeat 2 59 0 2 735 23 0 0 0 chr21 19711395 19711418 -28418477 + AT_rich Low_complexity Low_complexity 1 23 0 2 735 2207 170 39 34 chr21 19712361 19712905 -28416990 + MLT2A2 LTR ERVL 1 553 -1 2 735 22 0 0 0 chr21 19712980 19713002 -28416893 + AT_rich Low_complexity Low_complexity 1 22 0 2 735 1751 194 0 29 chr21 19713371 19713686 -28416209 - AluJo SINE Alu -5 307 2 2 735 235 338 0 14 chr21 19714557 19714626 -28415269 - MIRb SINE MIR -19 249 182 2 735 192 152 0 0 chr21 19714627 19714660 -28415235 + (TTCA)n Simple_repeat Simple_repeat 2 34 0 2 735 315 295 31 10 chr21 19714688 19714784 -28415111 - MIRb SINE MIR -102 166 69 2 735 186 189 0 0 chr21 19715025 19715062 -28414833 + A-rich Low_complexity Low_complexity 3 39 0 2 735 21 0 0 0 chr21 19717527 19717548 -28412347 + AT_rich Low_complexity Low_complexity 1 21 0 2 735 2670 50 0 0 chr21 19717776 19718079 -28411816 + AluY SINE Alu 1 303 -8 2 735 395 348 124 21 chr21 19718546 19718828 -28411067 - L3 LINE CR1 -47 4442 4132 2 735 195 239 0 61 chr21 19719424 19719473 -28410422 + L2b LINE L2 3107 3152 -223 2 735 1870 157 28 3 chr21 19719560 19719846 -28410049 - AluSx SINE Alu -19 293 1 2 735 1274 153 12 162 chr21 19720165 19720511 -28409384 + AluJr SINE Alu 1 294 -18 2 735 229 217 0 130 chr21 19720649 19720718 -28409177 - LTR82A LTR ERVL -627 245 186 2 735 619 301 78 66 chr21 19721153 19721409 -28408486 - MIR SINE MIR -1 261 3 2 735 804 308 71 55 chr21 19722689 19723224 -28406671 + L2a LINE L2 2615 3425 -1 2 735 2005 140 43 19 chr21 19723681 19724053 -28405842 + THE1D LTR ERVL-MaLR 1 381 0 2 735 187 229 95 32 chr21 19724249 19724312 -28405583 + L2a LINE L2 3354 3420 -6 2 735 767 263 2 17 chr21 19724685 19724902 -28404993 + L1M4 LINE L1 4180 4393 -1750 2 735 262 133 0 0 chr21 19726210 19726255 -28403640 - L1ME2z LINE L1 -130 6314 6270 2 735 502 274 42 54 chr21 19726857 19727096 -28402799 + MER106A DNA hAT-Charlie 1 236 0 2 735 233 293 307 21 chr21 19727894 19728086 -28401809 + MIR SINE MIR 3 249 -13 2 735 232 350 24 49 chr21 19728088 19728211 -28401684 + L2c LINE L2 3254 3373 -14 2 735 21 36 0 0 chr21 19728669 19728697 -28401198 + AT_rich Low_complexity Low_complexity 1 28 0 2 735 231 250 0 72 chr21 19728942 19729011 -28400884 - Charlie16a DNA hAT-Charlie -1 341 278 2 735 29 60 0 0 chr21 19730239 19730289 -28399606 + AT_rich Low_complexity Low_complexity 1 50 0 2 735 288 327 45 32 chr21 19730555 19730710 -28399185 + MIR SINE MIR 103 266 -2 2 735 300 326 187 6 chr21 19730951 19731133 -28398762 + MIRb SINE MIR 38 252 -16 2 735 23 33 0 0 chr21 19731248 19731278 -28398617 + AT_rich Low_complexity Low_complexity 1 30 0 2 735 2809 185 77 2 chr21 19732259 19732834 -28397061 - L1MB1 LINE L1 -1 6167 5550 2 735 1825 173 41 5 chr21 19732835 19733225 -28396670 - L1MB1 LINE L1 -1220 4920 4517 2 735 180 396 62 35 chr21 19733230 19733374 -28396521 + L2c LINE L2 3208 3355 -32 2 735 235 356 25 33 chr21 19734217 19734339 -28395556 - MER5A DNA hAT-Charlie -50 139 19 2 735 25 31 0 0 chr21 19734952 19734984 -28394911 + AT_rich Low_complexity Low_complexity 1 32 0 2 735 402 261 134 43 chr21 19735019 19735183 -28394712 - MIRb SINE MIR -4 264 86 2 735 187 271 15 92 chr21 19735237 19735302 -28394593 - MIR SINE MIR -202 60 1 2 735 21 57 0 0 chr21 19735798 19735833 -28394062 + AT_rich Low_complexity Low_complexity 1 35 0 2 735 295 297 51 0 chr21 19736696 19736814 -28393081 - MER103C DNA hAT-Charlie -111 186 63 2 735 310 216 20 20 chr21 19737766 19737865 -28392030 + T-rich Low_complexity Low_complexity 1 99 0 2 735 784 150 23 11 chr21 19737848 19738023 -28391872 + CT-rich Low_complexity Low_complexity 2 178 0 2 735 2214 105 30 0 chr21 19738047 19738351 -28391544 - AluSq SINE Alu 0 313 1 2 735 26 50 0 0 chr21 19739243 19739283 -28390612 + AT_rich Low_complexity Low_complexity 1 40 0 2 735 504 276 201 10 chr21 19740000 19740194 -28389701 - MIR SINE MIR -1 261 31 2 735 722 322 140 3 chr21 19740608 19740944 -28388951 + MLT1J2 LTR ERVL-MaLR 6 387 -61 2 735 1056 185 197 48 chr21 19743379 19743674 -28386221 - MER44A DNA TcMar-Tigger 0 339 1 2 735 49 66 0 0 chr21 19744274 19744365 -28385530 + AT_rich Low_complexity Low_complexity 1 91 0 2 735 369 0 0 0 chr21 19744415 19744456 -28385439 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 735 35 0 0 0 chr21 19745756 19745791 -28384104 + AT_rich Low_complexity Low_complexity 1 35 0 2 735 253 389 42 0 chr21 19746168 19746312 -28383583 - L2a LINE L2 0 3426 3277 2 735 3025 3 0 0 chr21 19746508 19746821 -28383074 + AluYb8 SINE Alu 1 313 -5 2 735 227 321 18 62 chr21 19748350 19748463 -28381432 - MIR SINE MIR -153 109 2 2 735 22 0 0 0 chr21 19748517 19748539 -28381356 + AT_rich Low_complexity Low_complexity 1 22 0 2 735 273 340 31 61 chr21 19749803 19749966 -28379929 - MIRb SINE MIR -60 208 51 2 735 189 204 23 0 chr21 19751122 19751166 -28378729 + L2a LINE L2 3382 3426 0 2 735 26 0 0 0 chr21 19751568 19751594 -28378301 + AT_rich Low_complexity Low_complexity 1 26 0 2 735 29 0 0 0 chr21 19751638 19751667 -28378228 + AT_rich Low_complexity Low_complexity 1 29 0 2 735 491 308 100 17 chr21 19751985 19752216 -28377679 + MIRb SINE MIR 4 253 -15 2 735 351 0 0 0 chr21 19752484 19752523 -28377372 + (CA)n Simple_repeat Simple_repeat 1 39 0 2 735 1098 110 64 0 chr21 19754130 19754303 -28375592 + L1PA13 LINE L1 5980 6163 0 2 735 307 356 77 16 chr21 19754397 19754591 -28375304 + MIR SINE MIR 7 212 -50 2 735 278 247 11 63 chr21 19754906 19755001 -28374894 + MER46C DNA TcMar-Tigger 79 168 -170 2 735 389 219 16 0 chr21 19754986 19755082 -28374813 + MER46C DNA TcMar-Tigger 259 361 0 2 735 34 42 0 0 chr21 19755261 19755309 -28374586 + AT_rich Low_complexity Low_complexity 1 48 0 2 735 33 66 0 0 chr21 19757395 19757456 -28372439 + AT_rich Low_complexity Low_complexity 1 61 0 2 735 495 346 70 38 chr21 19757717 19758068 -28371827 + MLT1L LTR ERVL-MaLR 171 540 -70 2 735 2293 96 0 3 chr21 19758068 19758359 -28371536 - AluSc SINE Alu -19 290 1 2 735 495 346 70 38 chr21 19758359 19758404 -28371491 + MLT1L LTR ERVL-MaLR 541 580 -30 2 735 424 305 15 15 chr21 19758509 19758639 -28371256 - MIR SINE MIR -114 148 19 2 735 201 175 0 0 chr21 19758882 19758922 -28370973 + CT-rich Low_complexity Low_complexity 3 42 0 2 735 534 31 0 0 chr21 19759913 19759977 -28369918 + (CA)n Simple_repeat Simple_repeat 2 65 0 2 735 204 179 0 49 chr21 19759977 19760018 -28369877 - MIR SINE MIR -167 95 57 2 735 28 29 0 0 chr21 19760229 19760264 -28369631 + AT_rich Low_complexity Low_complexity 1 35 0 2 735 671 131 25 18 chr21 19761375 19761538 -28368357 + A-rich Low_complexity Low_complexity 2 165 0 2 735 206 219 0 15 chr21 19761537 19761602 -28368293 + G-rich Low_complexity Low_complexity 2 65 0 2 735 386 334 70 85 chr21 19762763 19763096 -28366799 - L2c LINE L2 -1 3386 3064 2 735 2126 132 49 8 chr21 19763096 19763462 -28366433 - THE1D LTR ERVL-MaLR 0 381 1 2 735 9239 133 50 12 chr21 19763462 19764981 -28364914 - THE1D-int LTR ERVL-MaLR 0 1580 4 2 735 2167 116 70 6 chr21 19764981 19765333 -28364562 - THE1D LTR ERVL-MaLR -3 378 1 2 735 386 334 70 85 chr21 19765333 19765455 -28364440 - L2c LINE L2 -324 3063 2936 2 735 216 367 33 20 chr21 19765515 19765665 -28364230 + L3 LINE CR1 4160 4311 -178 2 735 417 54 0 0 chr21 19766832 19766888 -28363007 + (TC)n Simple_repeat Simple_repeat 1 56 0 2 735 184 271 0 0 chr21 19767652 19767700 -28362195 + MIRc SINE MIR 79 126 -142 2 735 409 339 46 23 chr21 19768629 19768804 -28361091 + MIRb SINE MIR 27 205 -63 2 735 2516 74 0 0 chr21 19768810 19769108 -28360787 + AluY SINE Alu 2 299 -12 2 735 456 67 0 0 chr21 19769108 19769168 -28360727 + (TCTA)n Simple_repeat Simple_repeat 2 61 0 2 735 203 283 50 0 chr21 19769761 19769821 -28360074 - L2a LINE L2 -20 3406 3344 2 735 372 378 10 50 chr21 19771456 19771654 -28358241 - MIRb SINE MIR -74 194 5 2 735 1306 208 45 3 chr21 19771809 19772118 -28357777 + L1MC4a LINE L1 7561 7882 0 2 735 7040 128 5 3 chr21 19772140 19774069 -28355826 + L1PA16 LINE L1 4234 6166 0 2 735 2382 85 3 0 chr21 19774575 19774869 -28355026 + AluSc SINE Alu 10 304 -5 2 735 524 311 95 13 chr21 19775003 19775234 -28354661 + MIR SINE MIR 13 262 0 2 735 557 331 58 26 chr21 19777793 19778209 -28351686 + L1ME3C LINE L1 4713 5141 -1005 2 735 640 322 40 34 chr21 19778350 19778675 -28351220 - LTR16C LTR ERVL -32 457 131 2 735 438 302 86 48 chr21 19778993 19779344 -28350551 + L1ME3C LINE L1 5525 5888 -235 2 735 1198 190 8 57 chr21 19779753 19780000 -28349895 - AluJr SINE Alu 0 312 78 2 735 689 292 85 68 chr21 19781325 19781866 -28348029 - HAL1b LINE L1 -752 1257 708 2 735 632 153 0 8 chr21 19782126 19782245 -28347650 + C-rich Low_complexity Low_complexity 4 121 0 2 735 461 352 136 68 chr21 19782245 19782583 -28347312 - HAL1b LINE L1 -1626 383 23 2 735 192 353 40 65 chr21 19783559 19783683 -28346212 + MIRc SINE MIR 13 133 -135 2 735 216 0 0 0 chr21 19785040 19785064 -28344831 + (CTG)n Simple_repeat Simple_repeat 1 24 0 2 735 26 30 0 0 chr21 19785258 19785291 -28344604 + AT_rich Low_complexity Low_complexity 1 33 0 2 735 229 122 24 24 chr21 19785502 19785544 -28344351 + C-rich Low_complexity Low_complexity 2 43 0 2 735 798 136 17 28 chr21 19785544 19785725 -28344170 + T-rich Low_complexity Low_complexity 1 179 0 2 735 2228 81 0 44 chr21 19785744 19786040 -28343855 - AluSg7 SINE Alu -25 287 5 2 735 1301 153 0 0 chr21 19786047 19786236 -28343659 - AluJr SINE Alu -15 297 109 2 735 24 0 0 0 chr21 19786248 19786272 -28343623 + AT_rich Low_complexity Low_complexity 1 24 0 2 735 4967 183 26 22 chr21 19786496 19788073 -28341822 - L1MA10 LINE L1 -3 6331 4742 2 735 3032 178 16 9 chr21 19788075 19788706 -28341189 + L1MA10 LINE L1 4095 4729 -1411 2 735 279 239 0 0 chr21 19790145 19790233 -28339662 + (CA)n Simple_repeat Simple_repeat 2 89 0 2 735 24 0 0 0 chr21 19791036 19791060 -28338835 + AT_rich Low_complexity Low_complexity 1 24 0 2 735 2036 189 56 25 chr21 19791245 19791530 -28338365 + MER65C LTR ERV1 3 304 -157 2 735 2572 77 0 0 chr21 19791530 19791841 -28338054 - AluY SINE Alu 0 311 1 2 91 2036 189 56 25 chr21 19791841 19792000 -28337895 + MER65C LTR ERV1 305 461 0 2 736 584 341 21 21 chr21 19792142 19792376 -28337519 + MLT1I LTR ERVL-MaLR 176 409 -2 2 736 192 383 92 0 chr21 19792470 19792590 -28337305 + MIR3 SINE MIR 78 208 0 2 736 412 221 126 0 chr21 19793239 19793334 -28336561 + MER5A1 DNA hAT-Charlie 43 149 -17 2 736 270 336 71 39 chr21 19793615 19793770 -28336125 + MIR SINE MIR 2 161 -101 2 736 239 311 101 50 chr21 19794220 19794301 -28335594 + LTR84a LTR ERVL 499 584 -173 2 736 2074 139 0 7 chr21 19794301 19794602 -28335293 - AluSx SINE Alu -13 299 1 2 736 239 311 101 50 chr21 19794602 19794659 -28335236 + LTR84a LTR ERVL 585 644 -113 2 736 595 317 21 79 chr21 19794813 19795053 -28334842 - MIR SINE MIR -1 261 36 2 736 488 348 104 70 chr21 19795069 19795598 -28334297 + MLT2F LTR ERVL 6 552 -111 2 736 266 296 20 75 chr21 19795623 19795723 -28334172 + LTR33C LTR ERVL 471 562 -67 2 736 2637 32 3 29 chr21 19795723 19796032 -28333863 - AluY SINE Alu -10 301 1 2 736 266 296 20 75 chr21 19796032 19796077 -28333818 + LTR33C LTR ERVL 563 608 -21 2 736 428 243 27 7 chr21 19797196 19797345 -28332550 + (TA)n Simple_repeat Simple_repeat 2 153 0 2 736 562 303 33 28 chr21 19798503 19798683 -28331212 - MIR SINE MIR -52 210 30 2 736 8176 99 31 5 chr21 19800561 19801717 -28328178 + THE1A-int LTR ERVL-MaLR 395 1580 0 2 736 2173 136 17 9 chr21 19801717 19802065 -28327830 + THE1A LTR ERVL-MaLR 1 351 -4 2 736 1567 281 93 2 chr21 19802963 19803477 -28326418 - LTR80B LTR ERVL -4 580 20 2 736 23 54 0 0 chr21 19803866 19803903 -28325992 + AT_rich Low_complexity Low_complexity 1 37 0 2 736 1620 216 53 31 chr21 19804683 19805137 -28324758 + MLT1C LTR ERVL-MaLR 1 464 -3 2 736 1640 164 110 7 chr21 19805727 19806008 -28323887 + AluJb SINE Alu 1 310 -2 2 736 304 306 28 50 chr21 19806592 19806771 -28323124 - L1MCa LINE L1 -4550 1958 1784 2 736 11428 30 0 0 chr21 19807420 19808807 -28321088 - L1PA3 LINE L1 -1967 4179 2793 2 736 9920 29 0 15 chr21 19808807 19810804 -28319091 + L1PA3 LINE L1 4191 6153 -2 2 736 220 380 37 0 chr21 19811550 19811658 -28318237 - MIRc SINE MIR -64 204 93 2 736 2860 10 3 0 chr21 19812409 19812711 -28317184 + AluYg6 SINE Alu 1 303 -8 2 736 2116 100 44 0 chr21 19813328 19813639 -28316256 + AluSq SINE Alu 2 313 0 2 736 2414 109 0 3 chr21 19813641 19813953 -28315942 + AluSc8 SINE Alu 1 311 -1 2 736 405 0 0 0 chr21 19813978 19814023 -28315872 + (TTA)n Simple_repeat Simple_repeat 2 46 0 2 736 2134 127 0 0 chr21 19814023 19814307 -28315588 - AluSz SINE Alu -28 284 1 2 736 22 35 0 0 chr21 19814502 19814531 -28315364 + AT_rich Low_complexity Low_complexity 1 29 0 2 736 26 0 0 0 chr21 19814796 19814822 -28315073 + AT_rich Low_complexity Low_complexity 1 26 0 2 736 5221 190 115 8 chr21 19815510 19816511 -28313384 + L1PA14 LINE L1 14 1123 -5566 2 736 3191 104 0 2 chr21 19816511 19816963 -28312932 + L1PA7 LINE L1 5704 6154 0 2 736 2236 164 25 23 chr21 19816963 19817264 -28312631 - L1MA6 LINE L1 -90 6210 5907 2 736 364 127 11 132 chr21 19817264 19817355 -28312540 + MADE1 DNA TcMar-Mariner 1 80 0 2 736 2236 170 25 40 chr21 19817355 19817523 -28312372 - L1MA6 LINE L1 -394 5906 5774 2 736 1823 146 88 0 chr21 19817523 19817797 -28312098 - AluSz SINE Alu -14 298 1 2 736 1936 192 25 108 chr21 19817797 19817882 -28312013 - L1MA6 LINE L1 -527 5773 5702 2 736 7968 169 27 17 chr21 19817879 19819481 -28310414 + L1M2 LINE L1 3738 5367 -776 2 736 2206 122 14 0 chr21 19819481 19819776 -28310119 + AluSg4 SINE Alu 1 299 -13 2 736 7968 157 17 45 chr21 19819776 19819825 -28310070 + L1M2 LINE L1 5368 5407 -893 2 736 1846 169 40 30 chr21 19819825 19820196 -28309699 + THE1C LTR ERVL-MaLR 1 375 0 2 736 2265 157 17 45 chr21 19820196 19820494 -28309401 + L1M2 LINE L1 5408 5708 -592 2 736 403 390 24 20 chr21 19820630 19820884 -28309011 + MIR SINE MIR 5 259 -3 2 736 190 196 38 38 chr21 19821744 19821797 -28308098 + L4 LINE RTE 550 602 -1427 2 736 384 324 98 11 chr21 19821803 19821987 -28307908 + MIR SINE MIR 47 246 -16 2 736 357 24 0 0 chr21 19822176 19822218 -28307677 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 736 239 203 12 60 chr21 19824190 19824274 -28305621 + (CATG)n Simple_repeat Simple_repeat 2 81 0 2 736 1537 170 4 30 chr21 19824699 19824964 -28304931 + AluJb SINE Alu 1 258 -54 2 736 1549 176 12 6 chr21 19825084 19825404 -28304491 - L1MA10 LINE L1 -1 6333 6012 2 736 272 333 57 19 chr21 19825501 19825660 -28304235 - L3 LINE CR1 -200 4289 4125 2 736 506 206 127 184 chr21 19825661 19825905 -28303990 - MLT2C2 LTR ERVL 0 464 235 2 736 2264 170 20 0 chr21 19825905 19826310 -28303585 + L1MB1 LINE L1 5580 5992 -197 2 736 2488 165 44 104 chr21 19826690 19827238 -28302657 - MLT2B2 LTR ERVL 0 515 1 2 736 2564 102 39 6 chr21 19827243 19827606 -28302289 + THE1C LTR ERVL-MaLR 1 375 0 2 736 509 296 93 9 chr21 19829318 19829543 -28300352 + MIRb SINE MIR 25 268 0 2 736 1742 284 104 37 chr21 19831197 19831586 -28298309 - L1M5 LINE L1 -964 5182 4794 2 736 2206 109 0 0 chr21 19831586 19831871 -28298024 - AluSz6 SINE Alu -7 305 21 2 736 1742 284 104 37 chr21 19831871 19832726 -28297169 - L1M5 LINE L1 -1353 4793 3855 2 736 1648 201 62 30 chr21 19832803 19833204 -28296691 - MLT2D LTR ERVL 0 414 1 2 736 239 188 15 59 chr21 19833237 19833288 -28296607 + L1MA9 LINE L1 6244 6295 -17 2 736 2791 164 33 4 chr21 19833288 19833771 -28296124 + LOR1a LTR ERV1 1 497 0 2 736 239 188 15 59 chr21 19833771 19833787 -28296108 + L1MA9 LINE L1 6296 6308 -4 2 736 22 0 0 0 chr21 19834606 19834628 -28295267 + AT_rich Low_complexity Low_complexity 1 22 0 2 736 180 0 0 0 chr21 19834868 19834888 -28295007 + (TAAAA)n Simple_repeat Simple_repeat 1 20 0 2 736 2039 53 4 11 chr21 19835072 19835339 -28294556 + L1P2 LINE L1 1703 1967 -4217 2 736 22764 102 5 18 chr21 19835338 19836210 -28293685 + L1PA7 LINE L1 2992 3791 -3215 2 736 2501 79 3 0 chr21 19836210 19836515 -28293380 + AluY SINE Alu 1 306 -5 2 736 22764 78 5 10 chr21 19836515 19839718 -28290177 + L1PA7 LINE L1 3792 6996 -18 2 736 225 0 0 0 chr21 19839718 19839743 -28290152 + (TAA)n Simple_repeat Simple_repeat 3 27 0 2 736 226 190 17 33 chr21 19840263 19840323 -28289572 + GA-rich Low_complexity Low_complexity 2 60 0 2 736 21 0 0 0 chr21 19841767 19841788 -28288107 + AT_rich Low_complexity Low_complexity 1 21 0 2 736 273 196 0 0 chr21 19844773 19844829 -28285066 + (TA)n Simple_repeat Simple_repeat 1 56 0 2 736 314 274 16 8 chr21 19846417 19846542 -28283353 + (TA)n Simple_repeat Simple_repeat 1 126 0 2 736 2241 119 3 0 chr21 19846613 19846907 -28282988 - AluSq2 SINE Alu -17 295 1 2 736 1760 144 0 8 chr21 19847658 19847915 -28281980 + AluJr SINE Alu 34 288 -24 2 736 183 250 23 0 chr21 19848880 19848924 -28280971 - L2a LINE L2 -10 3416 3372 2 736 495 270 48 36 chr21 19849419 19849584 -28280311 + MER5A DNA hAT-Charlie 23 189 0 2 736 214 364 22 37 chr21 19849613 19849747 -28280148 + L3 LINE CR1 3482 3613 -876 2 736 265 183 30 91 chr21 19849799 19849865 -28280030 - MLT1K LTR ERVL-MaLR -8 602 527 2 736 1159 246 115 14 chr21 19850689 19851221 -28278674 - L1MD3 LINE L1 -2 7993 7309 2 736 995 176 92 9 chr21 19851249 19851467 -28278428 - Tigger4a DNA TcMar-Tigger 0 236 1 2 736 218 188 0 40 chr21 19851566 19851616 -28278279 + (CATA)n Simple_repeat Simple_repeat 2 49 0 2 736 5146 54 3 1 chr21 19851851 19852504 -28277391 + L1PA7 LINE L1 5287 5940 -214 2 736 233 318 23 12 chr21 19852530 19852616 -28277279 + MER81 DNA hAT-Blackjack 1 87 -27 2 736 195 412 15 8 chr21 19852626 19852758 -28277137 - L3 LINE CR1 -416 4073 3941 2 736 373 362 46 17 chr21 19853361 19853535 -28276360 + MIRc SINE MIR 2 180 -88 2 736 273 327 119 0 chr21 19853556 19853657 -28276238 + MIRc SINE MIR 107 219 -49 2 736 24 0 0 0 chr21 19854486 19854510 -28275385 + AT_rich Low_complexity Low_complexity 1 24 0 2 736 1165 148 19 0 chr21 19854680 19854896 -28274999 + L1MA4A LINE L1 6077 6296 -7 2 736 26 0 0 0 chr21 19854908 19854934 -28274961 + AT_rich Low_complexity Low_complexity 1 26 0 2 736 212 175 63 0 chr21 19855131 19855194 -28274701 + (CTTAT)n Simple_repeat Simple_repeat 3 69 0 2 736 1029 244 59 56 chr21 19856050 19856459 -28273436 - L1ME3A LINE L1 -4 6169 5760 2 736 204 40 0 0 chr21 19856850 19856875 -28273020 + (TTCA)n Simple_repeat Simple_repeat 4 28 0 2 736 1349 284 127 57 chr21 19856945 19858032 -28271863 - L1ME3A LINE L1 -1195 4951 3778 2 736 2318 123 22 3 chr21 19858032 19858389 -28271506 - THE1B LTR ERVL-MaLR 0 364 1 2 736 1349 276 124 57 chr21 19858389 19858618 -28271277 - L1ME3A LINE L1 -2369 3777 3516 2 736 469 272 108 17 chr21 19858667 19858878 -28271017 - MIRb SINE MIR -4 264 24 2 736 201 167 0 0 chr21 19859065 19859101 -28270794 + A-rich Low_complexity Low_complexity 6 41 0 2 736 199 331 74 63 chr21 19859329 19859519 -28270376 + L2 LINE L2 635 826 -2593 2 736 762 347 34 37 chr21 19860278 19860802 -28269093 - L2a LINE L2 -2 3424 2904 2 736 2263 307 129 21 chr21 19860802 19861753 -28268142 - L2a LINE L2 -1163 2256 1203 2 736 2248 135 26 0 chr21 19861753 19862100 -28267795 - THE1B LTR ERVL-MaLR -8 356 1 2 736 1760 170 24 21 chr21 19862237 19862573 -28267322 - MER1B DNA hAT-Charlie -1 338 2 2 736 190 373 29 29 chr21 19863059 19863164 -28266731 + L2c LINE L2 3262 3366 -21 2 736 504 276 176 29 chr21 19863598 19863871 -28266024 - L2a LINE L2 0 3426 3114 2 736 23 78 0 0 chr21 19864153 19864204 -28265691 + AT_rich Low_complexity Low_complexity 1 51 0 2 736 933 295 59 25 chr21 19864250 19864605 -28265290 - Kanga1 DNA TcMar-Tc2 -1374 371 5 2 736 386 247 154 32 chr21 19864666 19864854 -28265041 + MER103C DNA hAT-Charlie 79 289 -8 2 736 272 256 0 65 chr21 19864985 19865077 -28264818 - LTR89 LTR ERVL? -776 103 18 2 736 27 29 0 0 chr21 19865452 19865486 -28264409 + AT_rich Low_complexity Low_complexity 1 34 0 2 736 1065 36 0 21 chr21 19866273 19866415 -28263480 + L1PA5 LINE L1 6016 6154 0 2 736 2487 60 13 0 chr21 19866570 19866869 -28263026 + AluY SINE Alu 1 303 -8 2 736 686 146 0 0 chr21 19866972 19867068 -28262827 + FLAM_C SINE Alu 26 121 -22 2 736 190 338 29 0 chr21 19867086 19867154 -28262741 - MIRc SINE MIR -111 157 88 2 736 22 0 0 0 chr21 19868322 19868344 -28261551 + AT_rich Low_complexity Low_complexity 1 22 0 2 736 192 224 41 0 chr21 19868999 19869048 -28260847 - X6A_LINE LINE CR1 -39 219 169 2 736 285 29 0 0 chr21 19869699 19869733 -28260162 + (GA)n Simple_repeat Simple_repeat 1 34 0 2 736 738 292 121 39 chr21 19869803 19870231 -28259664 + MLT1C LTR ERVL-MaLR 2 505 0 2 736 1125 212 47 59 chr21 19870406 19870845 -28259050 - MLT1B LTR ERVL-MaLR -7 460 1 2 736 30 27 0 0 chr21 19871934 19871971 -28257924 + AT_rich Low_complexity Low_complexity 1 37 0 2 736 22 56 0 0 chr21 19872402 19872438 -28257457 + AT_rich Low_complexity Low_complexity 1 36 0 2 736 242 256 47 35 chr21 19872758 19872843 -28257052 - MIRb SINE MIR -99 169 84 2 736 10825 76 8 5 chr21 19874722 19877009 -28252886 + L1PA7 LINE L1 3857 6143 -11 2 736 419 35 18 0 chr21 19877010 19877067 -28252828 + (TA)n Simple_repeat Simple_repeat 2 59 0 2 736 21 36 0 0 chr21 19877458 19877486 -28252409 + AT_rich Low_complexity Low_complexity 1 28 0 2 736 5661 159 20 25 chr21 19877685 19879664 -28250231 - L1MA6 LINE L1 -9 6291 4313 2 736 316 94 71 20 chr21 19880112 19880210 -28249685 + (TATAA)n Simple_repeat Simple_repeat 5 107 0 2 736 329 339 191 19 chr21 19880898 19881160 -28248735 + L3 LINE CR1 3656 3962 -527 2 736 216 208 0 20 chr21 19881204 19881253 -28248642 - L4 LINE RTE 0 2029 1982 2 736 278 364 14 70 chr21 19881430 19881572 -28248323 - L2a LINE L2 -8 3418 3285 2 736 2063 131 76 8 chr21 19881708 19882063 -28247832 + THE1D LTR ERVL-MaLR 1 379 -2 2 736 7429 132 6 107 chr21 19882066 19883470 -28246425 + THE1D-int LTR ERVL-MaLR 1 1263 -317 2 736 182 319 14 68 chr21 19883557 19883631 -28246264 + MIRc SINE MIR 9 78 -190 2 736 28 48 0 0 chr21 19883811 19883853 -28246042 + AT_rich Low_complexity Low_complexity 1 42 0 2 736 2115 127 0 3 chr21 19884880 19885164 -28244731 + AluSz SINE Alu 1 283 -29 2 736 302 61 20 0 chr21 19885164 19885213 -28244682 + (CAA)n Simple_repeat Simple_repeat 2 51 0 2 736 288 284 34 11 chr21 19885427 19885516 -28244379 + LTR79 LTR ERVL 1 91 -436 2 736 252 0 0 0 chr21 19886170 19886198 -28243697 + (TAAA)n Simple_repeat Simple_repeat 4 31 0 2 736 1429 88 12 117 chr21 19887499 19887755 -28242140 + MER30 DNA hAT-Charlie 1 229 -1 2 736 1658 210 3 19 chr21 19891141 19891455 -28238440 + AluJo SINE Alu 1 309 -3 2 736 207 0 0 0 chr21 19891481 19891504 -28238391 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2 736 185 404 53 0 chr21 19891954 19892048 -28237847 - MIRc SINE MIR -126 142 44 2 736 421 234 57 120 chr21 19892956 19893165 -28236730 + MLT1J2 LTR ERVL-MaLR 24 219 -229 2 736 21 57 0 0 chr21 19896001 19896036 -28233859 + AT_rich Low_complexity Low_complexity 1 35 0 2 736 213 39 0 0 chr21 19898432 19898458 -28231437 + (TAAAA)n Simple_repeat Simple_repeat 2 27 0 2 736 228 111 0 0 chr21 19898478 19898514 -28231381 + (TC)n Simple_repeat Simple_repeat 2 37 0 2 736 3508 221 75 1 chr21 19898647 19899523 -28230372 - L1MC3 LINE L1 -8 7777 6852 2 736 543 238 105 23 chr21 19899552 19899724 -28230171 + MER5A DNA hAT-Charlie 4 189 0 2 736 1778 104 29 45 chr21 19899777 19899817 -28230078 - L1MA5 LINE L1 -14 6286 6251 2 736 2275 108 7 0 chr21 19899817 19900114 -28229781 - AluSx1 SINE Alu -13 299 1 2 736 1778 104 29 45 chr21 19900114 19900385 -28229510 - L1MA5 LINE L1 -50 6250 5980 2 736 336 102 0 0 chr21 19900858 19900907 -28228988 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 736 21 0 0 0 chr21 19901160 19901181 -28228714 + AT_rich Low_complexity Low_complexity 1 21 0 2 736 195 139 0 0 chr21 19902632 19902668 -28227227 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 736 30 45 0 0 chr21 19902699 19902743 -28227152 + AT_rich Low_complexity Low_complexity 1 44 0 2 736 2237 230 22 91 chr21 19903370 19903499 -28226396 + L1MA4 LINE L1 5569 5676 -636 2 736 2337 98 0 3 chr21 19903499 19903794 -28226101 + AluSq SINE Alu 4 297 -16 2 736 2904 197 6 44 chr21 19903794 19904453 -28225442 + L1MA4 LINE L1 5675 6300 0 2 736 472 309 48 24 chr21 19904819 19904880 -28225015 + MIRb SINE MIR 26 87 -181 2 736 3418 186 50 13 chr21 19904880 19905576 -28224319 + MER72 LTR ERV1 1 722 0 2 736 472 309 48 24 chr21 19905576 19905723 -28224172 + MIRb SINE MIR 88 239 -29 2 736 319 325 88 12 chr21 19905950 19906121 -28223774 + L1M5 LINE L1 3386 3569 -2577 2 736 25 0 0 0 chr21 19906709 19906734 -28223161 + AT_rich Low_complexity Low_complexity 1 25 0 2 736 1769 198 10 16 chr21 19906805 19907118 -28222777 - AluJb SINE Alu -1 311 1 2 736 23 54 0 0 chr21 19907384 19907421 -28222474 + AT_rich Low_complexity Low_complexity 1 37 0 2 736 343 361 219 45 chr21 19908302 19908947 -28220948 + L2a LINE L2 2669 3426 0 2 736 37 0 0 0 chr21 19909302 19909339 -28220556 + AT_rich Low_complexity Low_complexity 1 37 0 2 736 638 53 0 0 chr21 19909934 19910010 -28219885 - FRAM SINE Alu -13 163 88 2 736 468 296 63 107 chr21 19910112 19910387 -28219508 + MLT1J1 LTR ERVL-MaLR 9 268 -176 2 736 905 195 0 13 chr21 19911949 19912103 -28217792 + AluJo SINE Alu 138 289 -23 2 736 716 291 160 20 chr21 19912547 19913003 -28216892 - L1ME3A LINE L1 -6 6167 5648 2 736 449 282 61 19 chr21 19913161 19913374 -28216521 - L1MEg LINE L1 -4568 1516 1295 2 736 403 317 88 3 chr21 19913488 19913549 -28216346 - L1MEg LINE L1 -4833 1251 1189 2 736 200 35 35 0 chr21 19913549 19913578 -28216317 + (TTATG)n Simple_repeat Simple_repeat 4 33 0 2 736 403 317 88 3 chr21 19913578 19913801 -28216094 - L1MEg LINE L1 -4896 1188 944 2 736 862 335 88 35 chr21 19913885 19914581 -28215314 - L1MEg LINE L1 -5267 817 85 2 736 185 371 22 11 chr21 19915502 19915592 -28214303 - L2c LINE L2 -38 3349 3259 2 736 2061 154 83 39 chr21 19915610 19916043 -28213852 + LTR47A LTR ERVL 1 452 0 2 736 219 273 182 0 chr21 19916217 19916294 -28213601 + L2 LINE L2 2257 2347 -1072 2 736 3150 155 9 45 chr21 19916653 19917229 -28212666 - MER41D LTR ERV1 0 557 3 2 736 201 353 107 4 chr21 19917453 19917686 -28212209 - L2c LINE L2 -1114 2305 2049 2 736 193 340 39 39 chr21 19918817 19918921 -28210974 - L4 LINE RTE -854 1175 1072 2 736 258 247 0 23 chr21 19920935 19921022 -28208873 + A-rich Low_complexity Low_complexity 1 85 0 2 736 210 37 0 0 chr21 19922236 19922263 -28207632 + (TTG)n Simple_repeat Simple_repeat 1 27 0 2 737 2418 56 0 3 chr21 19923147 19923431 -28206464 + AluYc SINE Alu 11 293 -6 2 737 2280 202 58 9 chr21 19924670 19925200 -28204695 - MLT2B4 LTR ERVL 0 556 1 2 737 1580 218 39 11 chr21 19926046 19926395 -28203500 - MLT1A0 LTR ERVL-MaLR 0 365 5 2 737 2472 263 34 35 chr21 19926499 19927320 -28202575 - L1ME1 LINE L1 -40 6272 5312 2 737 2346 249 80 52 chr21 19927317 19928238 -28201657 + L1M4 LINE L1 3923 4869 -1277 2 737 6425 89 20 8 chr21 19928241 19929179 -28200716 - L1PA8A LINE L1 -1095 5051 4102 2 737 6275 85 9 3 chr21 19929180 19930215 -28199680 + L1PA8A LINE L1 5059 6104 -27 2 737 226 167 0 0 chr21 19930332 19930368 -28199527 + L1M4 LINE L1 4947 4982 -1164 2 737 354 320 25 77 chr21 19931443 19931639 -28198256 - MLT1J LTR ERVL-MaLR -206 306 121 2 737 1835 183 0 14 chr21 19932711 19933000 -28196895 + AluJb SINE Alu 2 286 -26 2 737 26 30 0 0 chr21 19933289 19933322 -28196573 + AT_rich Low_complexity Low_complexity 1 33 0 2 737 344 300 120 8 chr21 19933336 19933530 -28196365 + MIRb SINE MIR 42 268 0 2 737 365 170 150 0 chr21 19933543 19933643 -28196252 - LTR50 LTR ERVL -2 793 679 2 737 2215 35 0 0 chr21 19933658 19933915 -28195980 - LTR5_Hs LTR ERVK -711 257 1 2 737 14844 28 2 0 chr21 19933915 19935622 -28194273 - HERVK-int LTR ERVK 0 7536 5826 2 737 45436 40 0 1 chr21 19935621 19940996 -28188899 - HERVK-int LTR ERVK -2002 5534 163 2 737 8455 23 0 0 chr21 19940996 19941962 -28187933 - LTR5_Hs LTR ERVK -2 966 1 2 737 26 30 0 0 chr21 19942043 19942076 -28187819 + AT_rich Low_complexity Low_complexity 1 33 0 2 737 344 300 120 8 chr21 19942090 19942284 -28187611 + MIRb SINE MIR 42 268 0 2 737 865 239 204 20 chr21 19942297 19942893 -28187002 - LTR50 LTR ERVL -2 793 4 2 737 2258 111 19 13 chr21 19942962 19943269 -28186626 - AluSx3 SINE Alu -3 309 1 2 737 183 42 0 0 chr21 19943304 19943328 -28186567 + (TTCC)n Simple_repeat Simple_repeat 3 26 0 2 737 289 204 30 20 chr21 19944500 19944600 -28185295 + GA-rich Low_complexity Low_complexity 6 106 0 2 737 3305 122 4 34 chr21 19944954 19945490 -28184405 - L1PB2 LINE L1 -2 6865 6346 2 737 674 137 0 8 chr21 19945495 19945620 -28184275 + L1P4 LINE L1 5185 5308 -838 2 737 10416 152 11 31 chr21 19945612 19947502 -28182393 - L1PB2 LINE L1 -2105 4757 2907 2 737 2329 97 3 3 chr21 19947502 19947800 -28182095 - AluSc8 SINE Alu -14 298 1 2 737 10416 148 48 13 chr21 19947800 19949649 -28180246 - L1PB2 LINE L1 -3956 2906 976 2 737 505 196 0 0 chr21 19950307 19950399 -28179496 - L1PBb LINE L1 -5421 783 692 2 737 207 0 0 0 chr21 19950399 19950422 -28179473 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2 737 512 292 233 4 chr21 19950587 19950862 -28179033 + LTR16C LTR ERVL 95 432 -57 2 737 300 318 72 33 chr21 19950910 19951063 -28178832 + ERV3-16A3_I-int LTR ERVL 4473 4631 -595 2 737 573 371 75 2 chr21 19951730 19952132 -28177763 + LTR16C LTR ERVL 59 489 0 2 737 211 282 114 13 chr21 19953533 19953612 -28176283 - L2a LINE L2 -46 3380 3294 2 737 1177 325 44 48 chr21 19954987 19955491 -28174404 + MER45C DNA hAT-Tip100 2 503 -450 2 737 339 364 28 14 chr21 19955693 19955905 -28173990 - MIR SINE MIR 0 262 48 2 737 672 155 10 0 chr21 19957521 19957618 -28172277 + AluSx SINE Alu 132 229 -83 2 737 208 388 41 101 chr21 19957683 19957901 -28171994 - L2a LINE L2 -194 3193 2989 2 737 2563 41 0 7 chr21 19958540 19958832 -28171063 - AluY SINE Alu -21 290 1 2 737 918 316 38 10 chr21 19959836 19960127 -28169768 + LTR16A LTR ERVL 148 446 -5 2 737 267 103 0 0 chr21 19960488 19960527 -28169368 + (A)n Simple_repeat Simple_repeat 1 39 0 2 737 1946 332 82 54 chr21 19961840 19963079 -28166816 + L2 LINE L2 443 1715 -1704 2 737 367 375 116 12 chr21 19963655 19963992 -28165903 + MLT1K LTR ERVL-MaLR 224 595 0 2 737 503 385 115 17 chr21 19964836 19965418 -28164477 + L3 LINE CR1 3294 3932 -557 2 737 851 62 0 9 chr21 19965635 19965748 -28164147 - L1PA7 LINE L1 -5 6149 6038 2 737 1079 306 85 119 chr21 19966664 19968857 -28161038 - HAL1 LINE L1 -255 2252 133 2 737 4287 45 33 0 chr21 19968975 19969514 -28160381 + L1PA5 LINE L1 5598 6154 0 2 737 1990 96 0 114 chr21 19970383 19970716 -28159179 + AluSz6 SINE Alu 1 295 -17 2 737 198 0 0 0 chr21 19970804 19970826 -28159069 + (TTA)n Simple_repeat Simple_repeat 3 24 0 2 737 6488 77 25 1 chr21 19970826 19972036 -28157859 - L1PA7 LINE L1 -18 6136 4901 2 737 208 164 35 35 chr21 19972162 19972219 -28157676 + CT-rich Low_complexity Low_complexity 4 60 0 2 737 21 36 0 0 chr21 19972796 19972824 -28157071 + AT_rich Low_complexity Low_complexity 1 28 0 2 737 21 36 0 0 chr21 19973357 19973385 -28156510 + AT_rich Low_complexity Low_complexity 1 28 0 2 737 1602 183 10 53 chr21 19975196 19975497 -28154398 - AluJr SINE Alu -22 290 3 2 737 382 285 70 40 chr21 19975926 19976163 -28153732 - L2a LINE L2 0 3426 3156 2 737 225 136 15 29 chr21 19976189 19976257 -28153638 + (TTA)n Simple_repeat Simple_repeat 1 67 0 2 737 548 284 56 32 chr21 19976296 19976547 -28153348 - MIR SINE MIR -2 260 4 2 737 180 125 0 0 chr21 19976788 19976820 -28153075 + (CTTTG)n Simple_repeat Simple_repeat 3 34 0 2 737 1263 236 12 80 chr21 19977482 19977882 -28152013 + MLT1A LTR ERVL-MaLR 1 373 -1 2 737 302 438 54 5 chr21 19978507 19978693 -28151202 - L4 LINE RTE -728 1301 1107 2 737 31 88 0 0 chr21 19979141 19979221 -28150674 + AT_rich Low_complexity Low_complexity 1 80 0 2 737 261 167 0 0 chr21 19981455 19981509 -28148386 + (TA)n Simple_repeat Simple_repeat 1 54 0 2 737 21 0 0 0 chr21 19981736 19981757 -28148138 + AT_rich Low_complexity Low_complexity 1 21 0 2 737 24 53 0 0 chr21 19981886 19981924 -28147971 + AT_rich Low_complexity Low_complexity 1 38 0 2 737 25 31 0 0 chr21 19982652 19982684 -28147211 + AT_rich Low_complexity Low_complexity 1 32 0 2 737 333 339 26 73 chr21 19982771 19982962 -28146933 + L2c LINE L2 3206 3387 0 2 737 681 209 0 7 chr21 19983648 19983783 -28146112 + MLT1A0 LTR ERVL-MaLR 13 146 -219 2 737 627 237 0 0 chr21 19983783 19983922 -28145973 + L1PB4 LINE L1 6017 6155 -1 2 737 335 333 136 20 chr21 19983972 19984171 -28145724 - MIR SINE MIR -40 222 1 2 737 1306 213 24 54 chr21 19984433 19984682 -28145213 - MSTD LTR ERVL-MaLR 0 396 146 2 737 1730 101 9 0 chr21 19984682 19984909 -28144986 + AluSx4 SINE Alu 84 312 0 2 737 1306 213 24 54 chr21 19984910 19984958 -28144937 - MSTD LTR ERVL-MaLR -251 145 108 2 737 684 351 36 10 chr21 19985164 19985466 -28144429 + MLT1I LTR ERVL-MaLR 92 401 -10 2 737 483 316 6 66 chr21 19985468 19985512 -28144383 + LTR33C LTR ERVL 1 38 -591 2 737 369 0 0 0 chr21 19985512 19985553 -28144342 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 737 1753 195 0 0 chr21 19985555 19985842 -28144053 - AluJb SINE Alu -24 288 2 2 737 483 316 6 66 chr21 19985842 19985960 -28143935 + LTR33C LTR ERVL 39 156 -473 2 737 310 228 21 31 chr21 19986138 19986255 -28143640 + LTR33C LTR ERVL 537 661 -2 2 737 450 323 56 0 chr21 19986297 19986458 -28143437 - MIRb SINE MIR -48 220 51 2 737 22 0 0 0 chr21 19988793 19988815 -28141080 + AT_rich Low_complexity Low_complexity 1 22 0 2 737 192 418 57 0 chr21 19991056 19991197 -28138698 + L2c LINE L2 3016 3164 -223 2 737 243 184 0 0 chr21 19991867 19991905 -28137990 + LTR80A LTR ERVL 3 40 -543 2 737 302 230 44 33 chr21 19991906 19991996 -28137899 + LTR80A LTR ERVL 491 581 -2 2 737 254 286 77 70 chr21 19992014 19992326 -28137569 + HAL1 LINE L1 1033 1346 -1161 2 737 21 0 0 0 chr21 19992328 19992349 -28137546 + AT_rich Low_complexity Low_complexity 1 21 0 2 737 1018 313 44 10 chr21 19993568 19993952 -28135943 - LTR80A LTR ERVL 0 583 187 2 737 1569 230 24 53 chr21 19993952 19994407 -28135488 - LTR47B LTR ERVL -1 442 1 2 737 213 262 0 64 chr21 19995427 19995537 -28134358 + A-rich Low_complexity Low_complexity 3 105 0 2 737 977 329 67 19 chr21 19995969 19996434 -28133461 - LTR16C LTR ERVL 0 489 3 2 737 528 303 85 38 chr21 19996896 19997519 -28132376 - L1MEe LINE L1 -553 5784 5132 2 737 326 323 196 61 chr21 19997520 19997945 -28131950 - HAL1 LINE L1 -660 1847 1347 2 737 1565 37 0 0 chr21 19997945 19998136 -28131759 - L1PA3 LINE L1 0 6155 5965 2 737 326 323 196 61 chr21 19998136 19998270 -28131625 - HAL1 LINE L1 -1161 1346 1212 2 737 2117 239 118 30 chr21 19999007 19999986 -28129909 - L1MEe LINE L1 -3212 3109 2023 2